LINC02147

Summary

LINC02147 (long intergenic non-protein coding RNA 2147, HGNC:53007) is a long non-coding RNA gene on chromosome 5q23.1.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:53007
Approved symbol	LINC02147
Name	long intergenic non-protein coding RNA 2147
Location	5q23.1
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000249797
Ensembl biotype	lncRNA
Entrez	102467224
RNAcentral	URS000075AC32 — lncRNA, 879 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 12 — 12 lncRNA

ENST00000509367, ENST00000509669, ENST00000657852, ENST00000661774, ENST00000666478, ENST00000667067, ENST00000746105, ENST00000746106, ENST00000746107, ENST00000746108, ENST00000814884, ENST00000814885

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000509367 — 4 exons

Exon	Start	End
ENSE00002037332	118265354	118266267
ENSE00002056487	118187465	118187591
ENSE00003886968	117925010	117925131
ENSE00004216277	117730489	117730668

Expression profiles

Bgee: expression breadth ubiquitous, 120 present calls, max score 74.43.

FANTOM5 (CAGE): breadth tissue_specific, TPM avg 0.1564 / max 22.0447, expressed in 71 samples.

FANTOM5 promoters (2 alternative TSS)

Promoter ID	TPM avg	Samples expressed
58098	0.1340	65
203667	0.0224	3

Top tissues by expression

120 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
sural nerve	UBERON:0015488	74.43	gold quality
hindlimb stylopod muscle	UBERON:0004252	69.56	gold quality
mucosa of stomach	UBERON:0001199	69.31	gold quality
colonic epithelium	UBERON:0000397	68.67	silver quality
gall bladder	UBERON:0002110	67.47	gold quality
ganglionic eminence	UBERON:0004023	67.27	gold quality
bone marrow cell	CL:0002092	67.23	silver quality
olfactory segment of nasal mucosa	UBERON:0005386	66.40	gold quality
endocervix	UBERON:0000458	65.92	gold quality
uterine cervix	UBERON:0000002	65.81	gold quality
ectocervix	UBERON:0012249	64.91	gold quality
lower esophagus muscularis layer	UBERON:0035833	63.69	gold quality
lower esophagus	UBERON:0013473	63.67	gold quality
lower esophagus mucosa	UBERON:0035834	63.58	gold quality
right atrium auricular region	UBERON:0006631	63.22	gold quality
esophagogastric junction muscularis propria	UBERON:0035841	62.93	gold quality
esophagus	UBERON:0001043	62.10	gold quality
adenohypophysis	UBERON:0002196	61.98	gold quality
fundus of stomach	UBERON:0001160	61.92	gold quality
pituitary gland	UBERON:0000007	60.92	gold quality
urinary bladder	UBERON:0001255	60.87	gold quality
myometrium	UBERON:0001296	60.76	gold quality
vagina	UBERON:0000996	60.51	gold quality
esophagus mucosa	UBERON:0002469	60.35	gold quality
spleen	UBERON:0002106	59.79	gold quality
mucosa of transverse colon	UBERON:0004991	59.68	gold quality
tonsil	UBERON:0002372	59.59	gold quality
thyroid gland	UBERON:0002046	59.47	gold quality
left lobe of thyroid gland	UBERON:0001120	59.40	gold quality
fallopian tube	UBERON:0003889	59.38	gold quality

Single-cell (SCXA)

Detected in 3 experiment(s), a significant marker in 3.

Experiment	Marker?	Max mean expression
E-MTAB-11268	yes	1528.94
E-HCAD-35	yes	6.65
E-ANND-3	yes	3.70

Regulation

Is transcription factor: no

Literature-anchored findings (GeneRIF, showing 1)

• Low LINC02147 expression promotes the malignant progression of oral submucous fibrosis. (PMID:35906577)

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.