LINC02153

Summary

LINC02153 (long intergenic non-protein coding RNA 2153, HGNC:27823) is a long non-coding RNA gene on chromosome 8p21.3.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:27823
Approved symbol	LINC02153
Name	long intergenic non-protein coding RNA 2153
Location	8p21.3
Locus type	RNA, long non-coding
Status	Approved
Aliases	ENST00000517573
Ensembl gene	ENSG00000253199
Ensembl biotype	lncRNA
Entrez	286114
RNAcentral	URS00005A8B89 — lncRNA, 1644 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 11 — 11 lncRNA

ENST00000517573, ENST00000522604, ENST00000653516, ENST00000656273, ENST00000657153, ENST00000657661, ENST00000660502, ENST00000660936, ENST00000666963, ENST00000668301, ENST00000668628

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000517573 — 2 exons

Exon	Start	End
ENSE00002104436	20973797	20974522
ENSE00002124096	20974804	20975029

Expression profiles

Bgee: expression breadth broad, 92 present calls, max score 95.14.

FANTOM5 (CAGE): breadth tissue_specific, TPM avg 0.0114 / max 12.1793, expressed in 3 samples.

FANTOM5 promoters (1 alternative TSS)

Promoter ID	TPM avg	Samples expressed
87637	0.0114	3

Top tissues by expression

202 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
sperm	CL:0000019	95.14	gold quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	92.85	gold quality
left testis	UBERON:0004533	83.83	gold quality
right testis	UBERON:0004534	82.99	gold quality
testis	UBERON:0000473	80.67	gold quality
right lobe of liver	UBERON:0001114	76.87	gold quality
liver	UBERON:0002107	67.94	gold quality
skeletal muscle tissue of rectus abdominis	UBERON:0004511	65.21	gold quality
cerebellar vermis	UBERON:0004720	62.88	gold quality
myocardium	UBERON:0002349	61.96	gold quality
primordial germ cell in gonad	CL:0000670 ∩ UBERON:0000991	59.57	gold quality
saphenous vein	UBERON:0007318	58.62	gold quality
trabecular bone tissue	UBERON:0002483	58.60	gold quality
bone marrow	UBERON:0002371	58.35	gold quality
skeletal muscle tissue of biceps brachii	UBERON:0004502	58.31	gold quality
nipple	UBERON:0002030	58.10	gold quality
skeletal muscle tissue	UBERON:0001134	57.92	gold quality
superficial temporal artery	UBERON:0001614	56.98	gold quality
lymph node	UBERON:0000029	56.95	gold quality
adult mammalian kidney	UBERON:0000082	56.84	gold quality
prefrontal cortex	UBERON:0000451	56.83	gold quality
pons	UBERON:0000988	56.55	gold quality
nasal cavity epithelium	UBERON:0005384	56.48	gold quality
pericardium	UBERON:0002407	56.47	gold quality
cardia of stomach	UBERON:0001162	56.28	gold quality
layer of synovial tissue	UBERON:0007616	56.21	gold quality
substantia nigra pars compacta	UBERON:0001965	56.19	gold quality
subthalamic nucleus	UBERON:0001906	56.17	gold quality
trachea	UBERON:0003126	56.14	gold quality
dorsal root ganglion	UBERON:0000044	56.09	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	2.29

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.