LINC02160

Summary

LINC02160 (long intergenic non-protein coding RNA 2160, HGNC:53021) is a long non-coding RNA gene on chromosome 5p13.3.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:53021
Approved symbol	LINC02160
Name	long intergenic non-protein coding RNA 2160
Location	5p13.3
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000251443
Ensembl biotype	lncRNA
Entrez	105374716
RNAcentral	URS000042AD1D — lncRNA, 517 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 38 — 38 lncRNA

ENST00000503577, ENST00000661759, ENST00000667183, ENST00000690843, ENST00000799291, ENST00000799292, ENST00000799293, ENST00000799294, ENST00000799295, ENST00000799296, ENST00000799297, ENST00000799298, ENST00000799299, ENST00000799300, ENST00000799301, ENST00000799302, ENST00000799303, ENST00000799304, ENST00000799305, ENST00000799306, ENST00000799307, ENST00000799308, ENST00000799309, ENST00000799310, ENST00000799311, ENST00000799312, ENST00000799313, ENST00000799314, ENST00000799315, ENST00000799316, ENST00000799317, ENST00000799318, ENST00000799319, ENST00000799320, ENST00000799321, ENST00000799322, ENST00000799323, ENST00000799324

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000503577 — 4 exons

Exon	Start	End
ENSE00002021698	33255476	33255553
ENSE00002036343	33229735	33229858
ENSE00002066006	33244852	33245056
ENSE00002085149	33248542	33248651

Expression profiles

Bgee: expression breadth broad, 99 present calls, max score 86.29.

FANTOM5 (CAGE): breadth tissue_specific, TPM avg 0.0293 / max 7.8504, expressed in 14 samples.

FANTOM5 promoters (1 alternative TSS)

Promoter ID	TPM avg	Samples expressed
56041	0.0293	14

Top tissues by expression

99 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
tonsil	UBERON:0002372	86.29	gold quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	75.32	gold quality
saliva-secreting gland	UBERON:0001044	67.78	gold quality
minor salivary gland	UBERON:0001830	65.31	gold quality
liver	UBERON:0002107	64.88	gold quality
ventricular zone	UBERON:0003053	62.89	gold quality
right lobe of liver	UBERON:0001114	61.40	gold quality
sural nerve	UBERON:0015488	59.56	silver quality
bone marrow	UBERON:0002371	58.63	gold quality
hindlimb stylopod muscle	UBERON:0004252	58.29	gold quality
gastrocnemius	UBERON:0001388	57.59	gold quality
muscle of leg	UBERON:0001383	57.48	gold quality
temporal lobe	UBERON:0001871	57.31	gold quality
calcaneal tendon	UBERON:0003701	56.39	gold quality
monocyte	CL:0000576	55.86	gold quality
olfactory segment of nasal mucosa	UBERON:0005386	54.75	gold quality
heart left ventricle	UBERON:0002084	53.99	gold quality
spleen	UBERON:0002106	53.83	gold quality
placenta	UBERON:0001987	53.00	gold quality
heart	UBERON:0000948	52.44	gold quality
skeletal muscle tissue	UBERON:0001134	51.60	silver quality
islet of Langerhans	UBERON:0000006	51.14	gold quality
blood	UBERON:0000178	50.67	gold quality
hypothalamus	UBERON:0001898	50.64	gold quality
fundus of stomach	UBERON:0001160	50.21	gold quality
lymph node	UBERON:0000029	49.95	silver quality
urinary bladder	UBERON:0001255	49.76	gold quality
endometrium	UBERON:0001295	49.42	gold quality
multicellular organism	UBERON:0000468	48.41	gold quality
right atrium auricular region	UBERON:0006631	48.08	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	2.28

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.