LINC02165

Summary

LINC02165 (long intergenic non-protein coding RNA 2165, HGNC:53026) is a long non-coding RNA gene on chromosome 16q21.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:53026
Approved symbol	LINC02165
Name	long intergenic non-protein coding RNA 2165
Location	16q21
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000261014
Ensembl biotype	lncRNA
Entrez	101927629
RNAcentral	URS0000EF449A — lncRNA, 1610 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 6 — 6 lncRNA

ENST00000563061, ENST00000655106, ENST00000656744, ENST00000661557, ENST00000664326, ENST00000666316

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000563061 — 4 exons

Exon	Start	End
ENSE00002581896	63730476	63730650
ENSE00002594253	63730237	63730312
ENSE00002624200	63731410	63731489
ENSE00003872297	63754606	63755884

Expression profiles

Bgee: expression breadth broad, 57 present calls, max score 93.87.

FANTOM5 (CAGE): breadth tissue_specific, TPM avg 0.0054 / max 4.0598, expressed in 3 samples.

FANTOM5 promoters (1 alternative TSS)

Promoter ID	TPM avg	Samples expressed
154482	0.0054	3

Top tissues by expression

57 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	93.87	gold quality
left testis	UBERON:0004533	74.21	gold quality
testis	UBERON:0000473	73.64	gold quality
right testis	UBERON:0004534	73.18	gold quality
multicellular organism	UBERON:0000468	61.83	gold quality
monocyte	CL:0000576	55.55	gold quality
blood	UBERON:0000178	54.44	gold quality
calcaneal tendon	UBERON:0003701	53.60	silver quality
primordial germ cell in gonad	CL:0000670 ∩ UBERON:0000991	50.53	silver quality
lymph node	UBERON:0000029	50.43	gold quality
gastrocnemius	UBERON:0001388	49.56	gold quality
urinary bladder	UBERON:0001255	49.49	gold quality
heart	UBERON:0000948	49.40	gold quality
prefrontal cortex	UBERON:0000451	48.41	gold quality
body of pancreas	UBERON:0001150	48.34	silver quality
right atrium auricular region	UBERON:0006631	48.27	gold quality
right lobe of liver	UBERON:0001114	47.34	silver quality
kidney	UBERON:0002113	47.09	silver quality
mucosa of transverse colon	UBERON:0004991	46.97	gold quality
islet of Langerhans	UBERON:0000006	46.92	silver quality
duodenum	UBERON:0002114	46.75	silver quality
olfactory segment of nasal mucosa	UBERON:0005386	46.35	silver quality
dorsolateral prefrontal cortex	UBERON:0009834	45.97	gold quality
esophagus mucosa	UBERON:0002469	45.85	silver quality
caudate nucleus	UBERON:0001873	44.31	gold quality
esophagogastric junction muscularis propria	UBERON:0035841	43.80	gold quality
tibial artery	UBERON:0007610	43.67	silver quality
Brodmann (1909) area 9	UBERON:0013540	43.17	silver quality
omental fat pad	UBERON:0010414	43.16	silver quality
transverse colon	UBERON:0001157	42.80	silver quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	1.96

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.