LINC02169

Summary

LINC02169 (long intergenic non-protein coding RNA 2169, HGNC:53031) is a long non-coding RNA gene on chromosome 16q12.2.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:53031
Approved symbol	LINC02169
Name	long intergenic non-protein coding RNA 2169
Location	16q12.2
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000259517
Ensembl biotype	lncRNA
Entrez	100996338
RNAcentral	URS00007E4D1B — lncRNA, 756 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 3 — 3 lncRNA

ENST00000561336, ENST00000649252, ENST00000799974

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000561336 — 3 exons

Exon	Start	End
ENSE00002550889	54246839	54246962
ENSE00002574800	54245618	54245801
ENSE00004189021	54270515	54270775

Expression profiles

Bgee: expression breadth broad, 53 present calls, max score 93.13.

FANTOM5 (CAGE): breadth tissue_specific, TPM avg 0.1656 / max 101.6033, expressed in 6 samples.

FANTOM5 promoters (2 alternative TSS)

Promoter ID	TPM avg	Samples expressed
157410	0.1501	6
157409	0.0156	6

Top tissues by expression

53 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
primordial germ cell in gonad	CL:0000670 ∩ UBERON:0000991	93.13	gold quality
sural nerve	UBERON:0015488	75.51	silver quality
left testis	UBERON:0004533	59.56	gold quality
testis	UBERON:0000473	59.04	gold quality
liver	UBERON:0002107	57.16	silver quality
right testis	UBERON:0004534	55.75	gold quality
multicellular organism	UBERON:0000468	51.93	gold quality
skin of abdomen	UBERON:0001416	51.93	gold quality
zone of skin	UBERON:0000014	51.72	gold quality
olfactory segment of nasal mucosa	UBERON:0005386	51.72	gold quality
skin of leg	UBERON:0001511	51.44	gold quality
blood	UBERON:0000178	49.01	gold quality
monocyte	CL:0000576	48.51	silver quality
gastrocnemius	UBERON:0001388	47.98	gold quality
thoracic mammary gland	UBERON:0005200	47.34	gold quality
heart left ventricle	UBERON:0002084	46.65	gold quality
body of pancreas	UBERON:0001150	46.48	silver quality
heart	UBERON:0000948	46.38	gold quality
lung	UBERON:0002048	45.90	silver quality
tibial nerve	UBERON:0001323	44.77	gold quality
islet of Langerhans	UBERON:0000006	44.67	silver quality
putamen	UBERON:0001874	43.85	silver quality
tibial artery	UBERON:0007610	43.48	silver quality
esophagogastric junction muscularis propria	UBERON:0035841	43.35	gold quality
apex of heart	UBERON:0002098	43.17	silver quality
subcutaneous adipose tissue	UBERON:0002190	42.81	gold quality
saliva-secreting gland	UBERON:0001044	42.50	gold quality
hypothalamus	UBERON:0001898	42.28	silver quality
left coronary artery	UBERON:0001626	42.21	silver quality
omental fat pad	UBERON:0010414	42.14	silver quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	2.13

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.