LINC02171

Summary

LINC02171 (long intergenic non-protein coding RNA 2171, HGNC:53033) is a long non-coding RNA gene on chromosome 4p16.3.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:53033
Approved symbol	LINC02171
Name	long intergenic non-protein coding RNA 2171
Location	4p16.3
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000250632
Ensembl biotype	lncRNA
Entrez	100133461
RNAcentral	URS000075CD14 — lncRNA, 1047 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 2 — 2 lncRNA

ENST00000508619, ENST00000768625

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000508619 — 3 exons

Exon	Start	End
ENSE00002032871	3676603	3676681
ENSE00002033354	3677171	3677855
ENSE00002075396	3673593	3673861

Expression profiles

Bgee: expression breadth broad, 21 present calls, max score 80.52.

Top tissues by expression

166 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
primordial germ cell in gonad	CL:0000670 ∩ UBERON:0000991	80.52	gold quality
parotid gland	UBERON:0001831	74.23	gold quality
myocardium	UBERON:0002349	72.32	gold quality
saliva-secreting gland	UBERON:0001044	68.14	gold quality
tendon of biceps brachii	UBERON:0008188	64.68	gold quality
tendon	UBERON:0000043	64.33	gold quality
nasal cavity epithelium	UBERON:0005384	63.22	gold quality
stromal cell of endometrium	CL:0002255	60.30	gold quality
cartilage tissue	UBERON:0002418	58.84	gold quality
decidua	UBERON:0002450	57.57	gold quality
oocyte	CL:0000023	57.39	gold quality
nasal cavity mucosa	UBERON:0001826	57.14	gold quality
deltoid	UBERON:0001476	56.76	gold quality
biceps brachii	UBERON:0001507	56.55	gold quality
superficial temporal artery	UBERON:0001614	56.22	gold quality
medial globus pallidus	UBERON:0002477	56.16	gold quality
palpebral conjunctiva	UBERON:0001812	55.75	gold quality
globus pallidus	UBERON:0001875	55.07	gold quality
blood	UBERON:0000178	54.90	gold quality
skeletal muscle tissue	UBERON:0001134	54.42	gold quality
esophagus squamous epithelium	UBERON:0006920	53.71	gold quality
gingival epithelium	UBERON:0001949	53.70	gold quality
epithelium of nasopharynx	UBERON:0001951	53.47	gold quality
substantia nigra	UBERON:0002038	53.47	gold quality
esophagus	UBERON:0001043	53.39	gold quality
colonic mucosa	UBERON:0000317	53.27	gold quality
mucosa of sigmoid colon	UBERON:0004993	52.98	gold quality
substantia nigra pars compacta	UBERON:0001965	52.78	gold quality
tonsil	UBERON:0002372	52.76	gold quality
vastus lateralis	UBERON:0001379	52.63	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	0.33

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.