LINC02172

Summary

LINC02172 (long intergenic non-protein coding RNA 2172, HGNC:53034) is a long non-coding RNA gene on chromosome 4q28.3.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:53034
Approved symbol	LINC02172
Name	long intergenic non-protein coding RNA 2172
Location	4q28.3
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000251632
Ensembl biotype	lncRNA
Entrez	105377443
RNAcentral	URS0000BC4547 — lncRNA, 2285 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 1 — 1 lncRNA

ENST00000507365

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000507365 — 2 exons

Exon	Start	End
ENSE00004135307	137601247	137603430
ENSE00004135308	137545705	137545810

Expression profiles

Bgee: expression breadth broad, 96 present calls, max score 74.68.

Top tissues by expression

225 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	74.68	gold quality
metanephros cortex	UBERON:0010533	71.32	gold quality
buccal mucosa cell	CL:0002336	63.39	gold quality
stromal cell of endometrium	CL:0002255	59.50	gold quality
ventricular zone	UBERON:0003053	57.62	silver quality
metanephros	UBERON:0000081	56.74	gold quality
cortical plate	UBERON:0005343	56.34	silver quality
ganglionic eminence	UBERON:0004023	56.30	silver quality
cortex of kidney	UBERON:0001225	55.88	gold quality
putamen	UBERON:0001874	54.86	gold quality
pancreatic ductal cell	CL:0002079	54.57	silver quality
adult mammalian kidney	UBERON:0000082	54.48	gold quality
prefrontal cortex	UBERON:0000451	54.13	gold quality
calcaneal tendon	UBERON:0003701	54.00	gold quality
monocyte	CL:0000576	53.98	silver quality
amygdala	UBERON:0001876	53.89	gold quality
endothelial cell	CL:0000115	53.52	gold quality
ileal mucosa	UBERON:0000331	53.42	silver quality
mononuclear cell	CL:0000842	52.92	silver quality
caudate nucleus	UBERON:0001873	52.76	gold quality
cingulate cortex	UBERON:0003027	52.35	gold quality
anterior cingulate cortex	UBERON:0009835	52.08	gold quality
upper leg skin	UBERON:0004262	51.76	gold quality
deltoid	UBERON:0001476	51.72	gold quality
skin of hip	UBERON:0001554	51.70	silver quality
gall bladder	UBERON:0002110	50.99	gold quality
kidney	UBERON:0002113	50.87	gold quality
uterine cervix	UBERON:0000002	50.81	gold quality
frontal pole	UBERON:0002795	50.41	gold quality
quadriceps femoris	UBERON:0001377	50.32	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 1.

Experiment	Marker?	Max mean expression
E-ANND-3	yes	2.79

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.