LINC02175

Summary

LINC02175 (long intergenic non-protein coding RNA 2175, HGNC:27550) is a long non-coding RNA gene on chromosome 16p12.1.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:27550
Approved symbol	LINC02175
Name	long intergenic non-protein coding RNA 2175
Location	16p12.1
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000262155
Ensembl biotype	lncRNA
Entrez	283887
RNAcentral	URS0000A769BE — lncRNA, 1957 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 26 — 26 lncRNA

ENST00000571219, ENST00000653156, ENST00000654253, ENST00000654349, ENST00000655561, ENST00000657497, ENST00000657680, ENST00000657697, ENST00000658101, ENST00000658831, ENST00000660807, ENST00000665669, ENST00000666471, ENST00000667339, ENST00000668238, ENST00000670692, ENST00000771034, ENST00000771035, ENST00000771036, ENST00000771037, ENST00000771038, ENST00000771039, ENST00000771040, ENST00000771041, ENST00000771042, ENST00000771043

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000571219 — 2 exons

Exon	Start	End
ENSE00004133612	25066914	25067646
ENSE00004133628	25067779	25068943

Expression profiles

Bgee: expression breadth ubiquitous, 164 present calls, max score 88.94.

FANTOM5 (CAGE): breadth broad, TPM avg 0.6341 / max 37.6472, expressed in 335 samples.

FANTOM5 promoters (2 alternative TSS)

Promoter ID	TPM avg	Samples expressed
153263	0.6074	330
153264	0.0267	9

Top tissues by expression

246 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
left testis	UBERON:0004533	88.94	gold quality
right testis	UBERON:0004534	88.68	gold quality
testis	UBERON:0000473	84.87	gold quality
sural nerve	UBERON:0015488	84.62	gold quality
right uterine tube	UBERON:0001302	83.93	gold quality
right hemisphere of cerebellum	UBERON:0014890	83.47	gold quality
cerebellar hemisphere	UBERON:0002245	83.37	gold quality
cerebellar cortex	UBERON:0002129	83.17	gold quality
adrenal tissue	UBERON:0018303	82.72	gold quality
cerebellum	UBERON:0002037	80.32	gold quality
C1 segment of cervical spinal cord	UBERON:0006469	79.49	gold quality
Brodmann (1909) area 9	UBERON:0013540	79.05	gold quality
anterior cingulate cortex	UBERON:0009835	78.91	gold quality
right frontal lobe	UBERON:0002810	78.53	gold quality
amygdala	UBERON:0001876	78.32	gold quality
hypothalamus	UBERON:0001898	78.24	gold quality
adenohypophysis	UBERON:0002196	77.97	gold quality
nucleus accumbens	UBERON:0001882	77.79	gold quality
pituitary gland	UBERON:0000007	77.66	gold quality
tibial nerve	UBERON:0001323	77.35	gold quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	77.31	gold quality
primordial germ cell in gonad	CL:0000670 ∩ UBERON:0000991	76.86	gold quality
caudate nucleus	UBERON:0001873	76.05	gold quality
spinal cord	UBERON:0002240	75.97	gold quality
body of uterus	UBERON:0009853	75.97	gold quality
putamen	UBERON:0001874	75.66	gold quality
calcaneal tendon	UBERON:0003701	75.33	gold quality
apex of heart	UBERON:0002098	75.28	gold quality
ventricular zone	UBERON:0003053	75.24	gold quality
gastrocnemius	UBERON:0001388	75.21	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	1.42

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.