LINC02196

Summary

LINC02196 (long intergenic non-protein coding RNA 2196, HGNC:53062) is a long non-coding RNA gene on chromosome 5p15.31.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:53062
Approved symbol	LINC02196
Name	long intergenic non-protein coding RNA 2196
Location	5p15.31
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000250974
Ensembl biotype	lncRNA
Entrez	107986402
RNAcentral	URS0002A702D6 — lncRNA, 2035 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 17 — 17 lncRNA

ENST00000510622, ENST00000512838, ENST00000648809, ENST00000651243, ENST00000655466, ENST00000715905, ENST00000835046, ENST00000835047, ENST00000835048, ENST00000835049, ENST00000835050, ENST00000835051, ENST00000835052, ENST00000835053, ENST00000835054, ENST00000835055, ENST00000835056

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000510622 — 3 exons

Exon	Start	End
ENSE00002051524	6870743	6870858
ENSE00004253121	6886426	6886882
ENSE00004253123	6868504	6868633

Expression profiles

Bgee: expression breadth broad, 82 present calls, max score 75.70.

Top tissues by expression

82 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	75.70	gold quality
sural nerve	UBERON:0015488	62.43	silver quality
urinary bladder	UBERON:0001255	58.75	gold quality
calcaneal tendon	UBERON:0003701	57.77	gold quality
ganglionic eminence	UBERON:0004023	57.58	gold quality
prefrontal cortex	UBERON:0000451	57.35	gold quality
frontal cortex	UBERON:0001870	51.78	gold quality
monocyte	CL:0000576	51.62	silver quality
islet of Langerhans	UBERON:0000006	51.37	gold quality
duodenum	UBERON:0002114	51.13	gold quality
superior frontal gyrus	UBERON:0002661	50.97	gold quality
placenta	UBERON:0001987	50.27	gold quality
cerebral cortex	UBERON:0000956	50.22	gold quality
gall bladder	UBERON:0002110	50.11	gold quality
Ammon’s horn	UBERON:0001954	50.04	gold quality
blood	UBERON:0000178	49.94	gold quality
anterior cingulate cortex	UBERON:0009835	49.54	gold quality
olfactory segment of nasal mucosa	UBERON:0005386	48.88	gold quality
adult mammalian kidney	UBERON:0000082	48.67	gold quality
dorsolateral prefrontal cortex	UBERON:0009834	48.64	gold quality
myometrium	UBERON:0001296	48.22	silver quality
brain	UBERON:0000955	47.88	gold quality
Brodmann (1909) area 9	UBERON:0013540	47.73	gold quality
primordial germ cell in gonad	CL:0000670 ∩ UBERON:0000991	46.33	silver quality
cortex of kidney	UBERON:0001225	46.22	silver quality
multicellular organism	UBERON:0000468	45.84	gold quality
primary visual cortex	UBERON:0002436	45.57	silver quality
pituitary gland	UBERON:0000007	45.29	gold quality
gastrocnemius	UBERON:0001388	45.04	silver quality
adenohypophysis	UBERON:0002196	44.91	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 1.

Experiment	Marker?	Max mean expression
E-ANND-3	yes	4.22

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.