LINC02197

Summary

LINC02197 (long intergenic non-protein coding RNA 2197, HGNC:53063) is a long non-coding RNA gene on chromosome 5q13.2.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:53063
Approved symbol	LINC02197
Name	long intergenic non-protein coding RNA 2197
Location	5q13.2
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000250387
Ensembl biotype	lncRNA
Entrez	102724392
RNAcentral	URS00008BC2AB — lncRNA, 2597 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 39 — 39 lncRNA

ENST00000502659, ENST00000517705, ENST00000518473, ENST00000671145, ENST00000717720, ENST00000717721, ENST00000717722, ENST00000717723, ENST00000773708, ENST00000773709, ENST00000773710, ENST00000773711, ENST00000773712, ENST00000773713, ENST00000773714, ENST00000773715, ENST00000773716, ENST00000773717, ENST00000773718, ENST00000773719, ENST00000773720, ENST00000773721, ENST00000773722, ENST00000773723, ENST00000773724, ENST00000773725, ENST00000773726, ENST00000773727, ENST00000773728, ENST00000773729, ENST00000773730, ENST00000773731, ENST00000773732, ENST00000773733, ENST00000773734, ENST00000773735, ENST00000773736, ENST00000773737, ENST00000773738

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000502659 — 2 exons

Exon	Start	End
ENSE00002045225	71351855	71353923
ENSE00002094659	71445645	71446342

Expression profiles

Bgee: expression breadth ubiquitous, 118 present calls, max score 81.18.

Top tissues by expression

118 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	81.18	gold quality
right lobe of liver	UBERON:0001114	72.51	gold quality
liver	UBERON:0002107	72.14	gold quality
islet of Langerhans	UBERON:0000006	70.35	gold quality
cortical plate	UBERON:0005343	66.47	gold quality
sural nerve	UBERON:0015488	65.14	gold quality
endocervix	UBERON:0000458	63.25	gold quality
right uterine tube	UBERON:0001302	61.79	gold quality
ganglionic eminence	UBERON:0004023	59.46	gold quality
adenohypophysis	UBERON:0002196	59.35	gold quality
vagina	UBERON:0000996	58.94	gold quality
pituitary gland	UBERON:0000007	57.20	gold quality
pancreas	UBERON:0001264	56.91	gold quality
prefrontal cortex	UBERON:0000451	55.47	gold quality
fallopian tube	UBERON:0003889	55.18	gold quality
gall bladder	UBERON:0002110	54.56	gold quality
urinary bladder	UBERON:0001255	53.99	gold quality
right lobe of thyroid gland	UBERON:0001119	53.17	gold quality
blood	UBERON:0000178	52.95	gold quality
placenta	UBERON:0001987	52.42	gold quality
myometrium	UBERON:0001296	52.25	gold quality
endometrium	UBERON:0001295	52.02	gold quality
frontal cortex	UBERON:0001870	51.43	gold quality
ectocervix	UBERON:0012249	51.26	gold quality
cortex of kidney	UBERON:0001225	51.02	gold quality
monocyte	CL:0000576	50.82	silver quality
adrenal tissue	UBERON:0018303	50.48	gold quality
right lung	UBERON:0002167	50.39	gold quality
corpus callosum	UBERON:0002336	50.32	gold quality
duodenum	UBERON:0002114	50.03	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	0.48

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.