LINC02198

Summary

LINC02198 (long intergenic non-protein coding RNA 2198, HGNC:53064) is a long non-coding RNA gene on chromosome 5q13.1.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:53064
Approved symbol	LINC02198
Name	long intergenic non-protein coding RNA 2198
Location	5q13.1
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000249352
Ensembl biotype	lncRNA
Entrez	101928885
RNAcentral	URS0000812201 — lncRNA, 2427 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 31 — 31 lncRNA

ENST00000503268, ENST00000504280, ENST00000505371, ENST00000654078, ENST00000668535, ENST00000690326, ENST00000692118, ENST00000692586, ENST00000696797, ENST00000701175, ENST00000701796, ENST00000717716, ENST00000717717, ENST00000843732, ENST00000843733, ENST00000843734, ENST00000843735, ENST00000843736, ENST00000843737, ENST00000843738, ENST00000843739, ENST00000843740, ENST00000843741, ENST00000843742, ENST00000843743, ENST00000843744, ENST00000843745, ENST00000843746, ENST00000843747, ENST00000843748, ENST00000843749

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000503268 — 4 exons

Exon	Start	End
ENSE00001969833	68960540	68960626
ENSE00002078645	68961869	68962163
ENSE00003859961	68831487	68832706
ENSE00003880822	69007027	69007185

Expression profiles

Bgee: expression breadth ubiquitous, 105 present calls, max score 80.26.

Top tissues by expression

105 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	80.26	silver quality
sural nerve	UBERON:0015488	70.06	gold quality
endometrium	UBERON:0001295	69.37	gold quality
right uterine tube	UBERON:0001302	68.55	gold quality
gall bladder	UBERON:0002110	65.52	gold quality
fallopian tube	UBERON:0003889	63.82	gold quality
ganglionic eminence	UBERON:0004023	63.77	gold quality
liver	UBERON:0002107	62.94	gold quality
right lobe of liver	UBERON:0001114	62.59	gold quality
right adrenal gland cortex	UBERON:0035827	60.96	gold quality
olfactory segment of nasal mucosa	UBERON:0005386	60.26	gold quality
right lobe of thyroid gland	UBERON:0001119	60.01	gold quality
left lobe of thyroid gland	UBERON:0001120	59.82	gold quality
thyroid gland	UBERON:0002046	59.67	gold quality
islet of Langerhans	UBERON:0000006	59.41	gold quality
right adrenal gland	UBERON:0001233	59.41	gold quality
adrenal gland	UBERON:0002369	58.91	gold quality
left adrenal gland cortex	UBERON:0035825	58.84	gold quality
pancreas	UBERON:0001264	58.67	gold quality
left adrenal gland	UBERON:0001234	58.64	gold quality
body of pancreas	UBERON:0001150	58.26	gold quality
urinary bladder	UBERON:0001255	57.63	gold quality
endocervix	UBERON:0000458	56.24	gold quality
prefrontal cortex	UBERON:0000451	55.29	gold quality
leukocyte	CL:0000738	54.50	silver quality
uterine cervix	UBERON:0000002	54.19	gold quality
left uterine tube	UBERON:0001303	53.67	gold quality
stromal cell of endometrium	CL:0002255	53.62	silver quality
smooth muscle tissue	UBERON:0001135	53.56	gold quality
prostate gland	UBERON:0002367	52.92	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 1.

Experiment	Marker?	Max mean expression
E-ANND-3	yes	2.75

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.