LINC02199

Summary

LINC02199 (long intergenic non-protein coding RNA 2199, HGNC:53065) is a long non-coding RNA gene on chromosome 5p15.31.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:53065
Approved symbol	LINC02199
Name	long intergenic non-protein coding RNA 2199
Location	5p15.31
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000250198
Ensembl biotype	lncRNA
Entrez	101929284
RNAcentral	URS000075C84D — lncRNA, 781 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 14 — 14 lncRNA

ENST00000506655, ENST00000510067, ENST00000510229, ENST00000651480, ENST00000669656, ENST00000692589, ENST00000796093, ENST00000796094, ENST00000796095, ENST00000796096, ENST00000796097, ENST00000796098, ENST00000796099, ENST00000796100

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000506655 — 1 exons

Exon	Start	End
ENSE00002038678	8839699	8842667

Expression profiles

Bgee: expression breadth ubiquitous, 106 present calls, max score 76.89.

FANTOM5 (CAGE): breadth tissue_specific, TPM avg 0.0627 / max 11.0266, expressed in 34 samples.

FANTOM5 promoters (2 alternative TSS)

Promoter ID	TPM avg	Samples expressed
55678	0.0347	22
55679	0.0280	9

Top tissues by expression

204 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	76.89	gold quality
primordial germ cell in gonad	CL:0000670 ∩ UBERON:0000991	68.04	gold quality
sural nerve	UBERON:0015488	66.76	gold quality
corpus callosum	UBERON:0002336	63.16	gold quality
C1 segment of cervical spinal cord	UBERON:0006469	61.06	gold quality
spinal cord	UBERON:0002240	59.16	gold quality
prefrontal cortex	UBERON:0000451	57.15	gold quality
putamen	UBERON:0001874	56.12	gold quality
amygdala	UBERON:0001876	55.94	gold quality
substantia nigra	UBERON:0002038	55.04	gold quality
Brodmann (1909) area 9	UBERON:0013540	54.89	gold quality
right testis	UBERON:0004534	54.49	gold quality
testis	UBERON:0000473	53.97	gold quality
left testis	UBERON:0004533	53.85	gold quality
monocyte	CL:0000576	53.52	silver quality
caudate nucleus	UBERON:0001873	53.27	gold quality
midbrain	UBERON:0001891	53.22	gold quality
gall bladder	UBERON:0002110	53.17	gold quality
calcaneal tendon	UBERON:0003701	52.44	silver quality
adrenal tissue	UBERON:0018303	52.32	gold quality
Ammon’s horn	UBERON:0001954	51.96	gold quality
apex of heart	UBERON:0002098	51.93	gold quality
hypothalamus	UBERON:0001898	51.78	gold quality
islet of Langerhans	UBERON:0000006	51.72	gold quality
frontal cortex	UBERON:0001870	50.37	gold quality
forebrain	UBERON:0001890	50.08	gold quality
brain	UBERON:0000955	49.88	gold quality
nucleus accumbens	UBERON:0001882	49.79	gold quality
neocortex	UBERON:0001950	49.46	gold quality
dorsolateral prefrontal cortex	UBERON:0009834	49.28	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 1.

Experiment	Marker?	Max mean expression
E-ANND-3	yes	5.72

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.