LINC02200

Summary

LINC02200 (long intergenic non-protein coding RNA 2200, HGNC:53066) is a long non-coding RNA gene on chromosome 5q22.2.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:53066
Approved symbol	LINC02200
Name	long intergenic non-protein coding RNA 2200
Location	5q22.2
Locus type	RNA, long non-coding
Status	Approved
Aliases	RP11-159K7.2
Ensembl gene	ENSG00000250358
Ensembl biotype	lncRNA
Entrez	102467214
RNAcentral	URS000075ED09 — lncRNA, 832 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 12 — 12 lncRNA

ENST00000507565, ENST00000508879, ENST00000513687, ENST00000653123, ENST00000663305, ENST00000667476, ENST00000690425, ENST00000773240, ENST00000773241, ENST00000773242, ENST00000773243, ENST00000773244

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000507565 — 3 exons

Exon	Start	End
ENSE00002070622	112629097	112629222
ENSE00004138049	112630391	112630985
ENSE00004138051	112628279	112628610

Expression profiles

Bgee: expression breadth broad, 98 present calls, max score 78.52.

FANTOM5 (CAGE): breadth tissue_specific, TPM avg 0.0319 / max 5.4053, expressed in 17 samples.

FANTOM5 promoters (1 alternative TSS)

Promoter ID	TPM avg	Samples expressed
57992	0.0319	17

Top tissues by expression

98 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
ventricular zone	UBERON:0003053	78.52	gold quality
ganglionic eminence	UBERON:0004023	72.80	gold quality
cortical plate	UBERON:0005343	70.93	gold quality
primordial germ cell in gonad	CL:0000670 ∩ UBERON:0000991	68.78	gold quality
hindlimb stylopod muscle	UBERON:0004252	66.82	gold quality
sural nerve	UBERON:0015488	65.91	silver quality
adrenal tissue	UBERON:0018303	59.88	gold quality
small intestine	UBERON:0002108	58.56	gold quality
amygdala	UBERON:0001876	57.22	gold quality
intestine	UBERON:0000160	56.90	gold quality
small intestine Peyer’s patch	UBERON:0003454	56.57	gold quality
prefrontal cortex	UBERON:0000451	56.14	gold quality
duodenum	UBERON:0002114	55.74	gold quality
liver	UBERON:0002107	55.64	gold quality
nucleus accumbens	UBERON:0001882	54.78	gold quality
cortex of kidney	UBERON:0001225	54.74	gold quality
islet of Langerhans	UBERON:0000006	54.39	gold quality
right lobe of liver	UBERON:0001114	54.36	gold quality
caudate nucleus	UBERON:0001873	53.79	gold quality
lymph node	UBERON:0000029	53.32	gold quality
putamen	UBERON:0001874	53.22	gold quality
blood	UBERON:0000178	52.88	gold quality
hypothalamus	UBERON:0001898	52.69	gold quality
brain	UBERON:0000955	52.17	gold quality
right adrenal gland cortex	UBERON:0035827	51.61	gold quality
frontal cortex	UBERON:0001870	51.59	gold quality
primary visual cortex	UBERON:0002436	51.51	gold quality
substantia nigra	UBERON:0002038	51.42	gold quality
Ammon’s horn	UBERON:0001954	51.34	gold quality
monocyte	CL:0000576	51.22	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	1.62

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.