LINC02202

Summary

LINC02202 (long intergenic non-protein coding RNA 2202, HGNC:53068) is a long non-coding RNA gene on chromosome 5q33.3.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:53068
Approved symbol	LINC02202
Name	long intergenic non-protein coding RNA 2202
Location	5q33.3
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000245812
Ensembl biotype	lncRNA
Entrez	101927740
RNAcentral	URS000075A437 — lncRNA, 2863 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 11 — 11 lncRNA

ENST00000499583, ENST00000517335, ENST00000523301, ENST00000688550, ENST00000826187, ENST00000826188, ENST00000826189, ENST00000826190, ENST00000826191, ENST00000826192, ENST00000826193

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000499583 — 3 exons

Exon	Start	End
ENSE00001975520	159111859	159111998
ENSE00004236802	159115112	159117478
ENSE00004236804	159100629	159100838

Expression profiles

Bgee: expression breadth ubiquitous, 127 present calls, max score 88.54.

FANTOM5 (CAGE): breadth broad, TPM avg 3.4594 / max 233.0946, expressed in 699 samples.

FANTOM5 promoters (5 alternative TSS)

Promoter ID	TPM avg	Samples expressed
59861	1.5029	415
59864	1.1526	382
59860	0.3819	213
59863	0.2586	127
59862	0.1634	78

Top tissues by expression

127 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
subcutaneous adipose tissue	UBERON:0002190	88.54	gold quality
adipose tissue	UBERON:0001013	86.76	gold quality
mucosa of stomach	UBERON:0001199	85.35	gold quality
tibial artery	UBERON:0007610	84.82	gold quality
popliteal artery	UBERON:0002250	84.81	gold quality
omental fat pad	UBERON:0010414	84.61	gold quality
left coronary artery	UBERON:0001626	84.35	gold quality
right coronary artery	UBERON:0001625	81.58	gold quality
thoracic mammary gland	UBERON:0005200	81.31	gold quality
calcaneal tendon	UBERON:0003701	78.71	gold quality
descending thoracic aorta	UBERON:0002345	77.80	gold quality
left uterine tube	UBERON:0001303	77.06	gold quality
thoracic aorta	UBERON:0001515	76.71	gold quality
ascending aorta	UBERON:0001496	76.53	gold quality
tibial nerve	UBERON:0001323	75.81	gold quality
apex of heart	UBERON:0002098	75.30	gold quality
urinary bladder	UBERON:0001255	73.91	gold quality
ectocervix	UBERON:0012249	73.35	gold quality
esophagogastric junction muscularis propria	UBERON:0035841	73.13	gold quality
endocervix	UBERON:0000458	72.96	gold quality
myometrium	UBERON:0001296	72.74	gold quality
body of uterus	UBERON:0009853	72.71	gold quality
colonic epithelium	UBERON:0000397	72.61	gold quality
lower esophagus muscularis layer	UBERON:0035833	72.57	gold quality
placenta	UBERON:0001987	72.55	gold quality
lower esophagus	UBERON:0013473	72.41	gold quality
stromal cell of endometrium	CL:0002255	72.37	gold quality
skin of leg	UBERON:0001511	72.14	gold quality
hindlimb stylopod muscle	UBERON:0004252	71.39	gold quality
right atrium auricular region	UBERON:0006631	71.33	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 1.

Experiment	Marker?	Max mean expression
E-ANND-3	yes	8.69

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.