LINC02204

Summary

LINC02204 (long intergenic non-protein coding RNA 2204, HGNC:53070) is a long non-coding RNA gene on chromosome 15q23.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:53070
Approved symbol	LINC02204
Name	long intergenic non-protein coding RNA 2204
Location	15q23
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000280639
Ensembl biotype	lncRNA
Entrez	101929151
RNAcentral	URS0000811C07 — lncRNA, 3206 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 1 — 1 lncRNA

ENST00000630447

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000630447 — 2 exons

Exon	Start	End
ENSE00003766014	70585875	70586606
ENSE00003768517	70570958	70573431

Expression profiles

Bgee: expression breadth broad, 85 present calls, max score 99.81.

FANTOM5 (CAGE): breadth tissue_specific, TPM avg 0.1379 / max 31.2998, expressed in 34 samples.

FANTOM5 promoters (1 alternative TSS)

Promoter ID	TPM avg	Samples expressed
150719	0.1379	34

Top tissues by expression

186 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
secondary oocyte	CL:0000655	99.81	gold quality
oocyte	CL:0000023	99.33	gold quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	73.83	gold quality
primordial germ cell in gonad	CL:0000670 ∩ UBERON:0000991	65.33	gold quality
ventricular zone	UBERON:0003053	59.71	silver quality
hindlimb stylopod muscle	UBERON:0004252	58.21	gold quality
stromal cell of endometrium	CL:0002255	56.54	gold quality
sural nerve	UBERON:0015488	55.58	silver quality
muscle of leg	UBERON:0001383	53.94	gold quality
gastrocnemius	UBERON:0001388	53.33	gold quality
skin of hip	UBERON:0001554	52.47	silver quality
tibial nerve	UBERON:0001323	50.64	gold quality
calcaneal tendon	UBERON:0003701	49.30	silver quality
metanephros cortex	UBERON:0010533	48.07	gold quality
popliteal artery	UBERON:0002250	46.25	silver quality
tibial artery	UBERON:0007610	46.25	silver quality
cortex of kidney	UBERON:0001225	46.23	gold quality
right lobe of liver	UBERON:0001114	46.21	silver quality
islet of Langerhans	UBERON:0000006	45.90	silver quality
metanephros	UBERON:0000081	45.71	gold quality
tonsil	UBERON:0002372	45.45	gold quality
left lobe of thyroid gland	UBERON:0001120	45.27	gold quality
skeletal muscle tissue	UBERON:0001134	45.15	silver quality
thyroid gland	UBERON:0002046	44.97	silver quality
aorta	UBERON:0000947	44.94	silver quality
right lobe of thyroid gland	UBERON:0001119	44.84	gold quality
right ovary	UBERON:0002118	44.61	gold quality
descending thoracic aorta	UBERON:0002345	44.50	gold quality
olfactory segment of nasal mucosa	UBERON:0005386	44.47	silver quality
spleen	UBERON:0002106	44.44	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	1.80

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.