LINC02207

Summary

LINC02207 (long intergenic non-protein coding RNA 2207, HGNC:53073) is a long non-coding RNA gene on chromosome 15q26.2.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:53073
Approved symbol	LINC02207
Name	long intergenic non-protein coding RNA 2207
Location	15q26.2
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000258476
Ensembl biotype	lncRNA
Entrez	101927153
RNAcentral	URS000075C3D9 — lncRNA, 778 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 99 — 99 lncRNA

ENST00000554530, ENST00000555255, ENST00000555281, ENST00000555364, ENST00000556030, ENST00000556763, ENST00000652797, ENST00000653089, ENST00000653271, ENST00000653712, ENST00000653939, ENST00000653987, ENST00000655344, ENST00000655821, ENST00000655932, ENST00000656375, ENST00000656752, ENST00000657169, ENST00000657503, ENST00000657633, ENST00000657668, ENST00000657833, ENST00000658249, ENST00000659027, ENST00000659318, ENST00000659365, ENST00000661202, ENST00000661341, ENST00000661477, ENST00000661588, ENST00000662634, ENST00000663183, ENST00000663418, ENST00000663638, ENST00000663747, ENST00000664063, ENST00000664215, ENST00000664216, ENST00000664456, ENST00000665813, ENST00000665888, ENST00000666582, ENST00000666819, ENST00000667407, ENST00000668200, ENST00000668413, ENST00000668781, ENST00000669081, ENST00000669164, ENST00000669185, ENST00000669391, ENST00000669582, ENST00000669599, ENST00000669877, ENST00000670232, ENST00000670913, ENST00000689945, ENST00000690084, ENST00000711607, ENST00000715979, ENST00000715980, ENST00000766258, ENST00000766259, ENST00000766260, ENST00000766261, ENST00000766262, ENST00000766263, ENST00000766264, ENST00000766265, ENST00000766266, ENST00000766267, ENST00000766268, ENST00000766269, ENST00000766270, ENST00000766271, ENST00000766272, ENST00000766273, ENST00000766274, ENST00000766275, ENST00000766276, ENST00000766277, ENST00000766278, ENST00000766279, ENST00000766280, ENST00000766281, ENST00000766282, ENST00000766283, ENST00000766284, ENST00000766285, ENST00000766286, ENST00000766287, ENST00000766288, ENST00000766289, ENST00000766290, ENST00000766291, ENST00000766292, ENST00000766293, ENST00000766294, ENST00000766295

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000554530 — 5 exons

Exon	Start	End
ENSE00002450060	93878034	93878356
ENSE00002467390	93865381	93865648
ENSE00002495302	93869691	93869833
ENSE00002522989	93863109	93863216
ENSE00002524936	93863742	93864155

Expression profiles

Bgee: expression breadth ubiquitous, 129 present calls, max score 83.83.

FANTOM5 (CAGE): breadth tissue_specific, TPM avg 0.3200 / max 70.9613, expressed in 97 samples.

FANTOM5 promoters (3 alternative TSS)

Promoter ID	TPM avg	Samples expressed
148670	0.1956	71
207658	0.1131	55
148669	0.0114	3

Top tissues by expression

132 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
blood	UBERON:0000178	83.83	gold quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	81.87	gold quality
right testis	UBERON:0004534	78.86	gold quality
left testis	UBERON:0004533	78.75	gold quality
testis	UBERON:0000473	78.48	gold quality
right lung	UBERON:0002167	78.24	gold quality
primordial germ cell in gonad	CL:0000670 ∩ UBERON:0000991	77.19	gold quality
monocyte	CL:0000576	76.62	gold quality
leukocyte	CL:0000738	76.30	gold quality
bone marrow cell	CL:0002092	75.75	gold quality
spleen	UBERON:0002106	72.38	gold quality
bone marrow	UBERON:0002371	72.11	gold quality
granulocyte	CL:0000094	69.69	gold quality
quadriceps femoris	UBERON:0001377	69.42	gold quality
thymus	UBERON:0002370	68.48	silver quality
vermiform appendix	UBERON:0001154	67.86	gold quality
cerebellar vermis	UBERON:0004720	67.75	gold quality
skeletal muscle tissue	UBERON:0001134	66.73	gold quality
left uterine tube	UBERON:0001303	65.47	gold quality
upper lobe of left lung	UBERON:0008952	63.71	gold quality
omental fat pad	UBERON:0010414	63.63	gold quality
gall bladder	UBERON:0002110	63.62	gold quality
hindlimb stylopod muscle	UBERON:0004252	63.58	gold quality
muscle tissue	UBERON:0002385	63.44	gold quality
lung	UBERON:0002048	62.32	gold quality
sural nerve	UBERON:0015488	62.19	silver quality
descending thoracic aorta	UBERON:0002345	62.14	gold quality
adipose tissue	UBERON:0001013	61.69	gold quality
ganglionic eminence	UBERON:0004023	61.51	gold quality
right adrenal gland cortex	UBERON:0035827	60.79	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 1.

Experiment	Marker?	Max mean expression
E-ANND-3	yes	6.09

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.