LINC02209

Summary

LINC02209 (long intergenic non-protein coding RNA 2209, HGNC:27827) is a long non-coding RNA gene on chromosome 8p12.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:27827
Approved symbol	LINC02209
Name	long intergenic non-protein coding RNA 2209
Location	8p12
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000253279
Ensembl biotype	lncRNA
Entrez	286135
RNAcentral	URS000075C585 — lncRNA, 2842 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 6 — 6 lncRNA

ENST00000521245, ENST00000524059, ENST00000657328, ENST00000665556, ENST00000670557, ENST00000812763

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000521245 — 3 exons

Exon	Start	End
ENSE00002095150	29923037	29923321
ENSE00002117190	29952190	29953724
ENSE00002126859	29921524	29922649

Expression profiles

Bgee: expression breadth broad, 73 present calls, max score 79.70.

Top tissues by expression

171 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	79.70	silver quality
secondary oocyte	CL:0000655	63.46	gold quality
primordial germ cell in gonad	CL:0000670 ∩ UBERON:0000991	62.99	silver quality
epithelium of nasopharynx	UBERON:0001951	60.14	gold quality
heart right ventricle	UBERON:0002080	59.24	gold quality
middle temporal gyrus	UBERON:0002771	58.86	gold quality
endothelial cell	CL:0000115	58.79	gold quality
mammary duct	UBERON:0001765	58.51	gold quality
Brodmann (1909) area 23	UBERON:0013554	58.44	gold quality
tibia	UBERON:0000979	58.27	gold quality
primary visual cortex	UBERON:0002436	56.93	silver quality
cortex of kidney	UBERON:0001225	56.62	gold quality
synovial joint	UBERON:0002217	56.34	gold quality
saphenous vein	UBERON:0007318	56.09	gold quality
oocyte	CL:0000023	56.05	gold quality
pericardium	UBERON:0002407	55.90	gold quality
layer of synovial tissue	UBERON:0007616	55.84	gold quality
urethra	UBERON:0000057	55.82	gold quality
trigeminal ganglion	UBERON:0001675	55.76	gold quality
nasal cavity epithelium	UBERON:0005384	55.75	gold quality
dorsal root ganglion	UBERON:0000044	55.63	gold quality
corpus callosum	UBERON:0002336	55.61	gold quality
fundus of stomach	UBERON:0001160	55.58	gold quality
thymus	UBERON:0002370	55.58	gold quality
nipple	UBERON:0002030	55.56	gold quality
inferior vagus X ganglion	UBERON:0005363	55.56	gold quality
pylorus	UBERON:0001166	55.35	gold quality
renal medulla	UBERON:0000362	55.30	gold quality
penis	UBERON:0000989	55.30	gold quality
superior surface of tongue	UBERON:0007371	55.27	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 1.

Experiment	Marker?	Max mean expression
E-ANND-3	yes	3.11

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.