LINC02212

Summary

LINC02212 (long intergenic non-protein coding RNA 2212, HGNC:53079) is a long non-coding RNA gene on chromosome 5p15.2.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:53079
Approved symbol	LINC02212
Name	long intergenic non-protein coding RNA 2212
Location	5p15.2
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000249396
Ensembl biotype	lncRNA
Entrez	101929412
RNAcentral	URS000040FC40 — lncRNA, 2130 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 27 — 27 lncRNA

ENST00000515243, ENST00000651900, ENST00000784960, ENST00000784961, ENST00000784962, ENST00000784963, ENST00000784964, ENST00000784965, ENST00000784966, ENST00000784967, ENST00000784968, ENST00000784969, ENST00000784970, ENST00000784971, ENST00000784972, ENST00000784973, ENST00000784974, ENST00000784975, ENST00000784976, ENST00000784977, ENST00000784978, ENST00000784979, ENST00000784980, ENST00000784981, ENST00000784982, ENST00000784983, ENST00000784984

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000515243 — 3 exons

Exon	Start	End
ENSE00002025701	10493527	10494092
ENSE00002047009	10495274	10495313
ENSE00002050022	10501205	10502728

Expression profiles

Bgee: expression breadth broad, 38 present calls, max score 72.56.

FANTOM5 (CAGE): breadth tissue_specific, TPM avg 0.2236 / max 111.2991, expressed in 27 samples.

FANTOM5 promoters (3 alternative TSS)

Promoter ID	TPM avg	Samples expressed
60899	0.1684	21
60898	0.0382	8
60900	0.0170	8

Top tissues by expression

38 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
cortex of kidney	UBERON:0001225	72.56	gold quality
metanephros cortex	UBERON:0010533	69.45	gold quality
kidney	UBERON:0002113	67.45	gold quality
adult mammalian kidney	UBERON:0000082	66.17	gold quality
spleen	UBERON:0002106	56.69	gold quality
right uterine tube	UBERON:0001302	56.45	gold quality
body of pancreas	UBERON:0001150	56.26	gold quality
pancreas	UBERON:0001264	55.37	gold quality
blood	UBERON:0000178	55.24	gold quality
lung	UBERON:0002048	54.53	gold quality
prefrontal cortex	UBERON:0000451	54.51	gold quality
multicellular organism	UBERON:0000468	53.97	gold quality
leukocyte	CL:0000738	53.56	silver quality
liver	UBERON:0002107	53.43	silver quality
islet of Langerhans	UBERON:0000006	51.39	gold quality
heart left ventricle	UBERON:0002084	49.45	gold quality
fallopian tube	UBERON:0003889	48.89	gold quality
bone marrow	UBERON:0002371	48.03	silver quality
intestine	UBERON:0000160	47.31	silver quality
esophagus mucosa	UBERON:0002469	46.98	gold quality
olfactory segment of nasal mucosa	UBERON:0005386	46.19	silver quality
Brodmann (1909) area 9	UBERON:0013540	44.08	silver quality
nucleus accumbens	UBERON:0001882	43.77	gold quality
C1 segment of cervical spinal cord	UBERON:0006469	43.54	gold quality
dorsolateral prefrontal cortex	UBERON:0009834	42.93	silver quality
hypothalamus	UBERON:0001898	42.59	gold quality
putamen	UBERON:0001874	41.79	silver quality
omental fat pad	UBERON:0010414	41.22	silver quality
anterior cingulate cortex	UBERON:0009835	41.10	gold quality
skin of leg	UBERON:0001511	40.76	silver quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	1.43

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.