LINC02215

Summary

LINC02215 (long intergenic non-protein coding RNA 2215, HGNC:53082) is a long non-coding RNA gene on chromosome 5q23.1.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:53082
Approved symbol	LINC02215
Name	long intergenic non-protein coding RNA 2215
Location	5q23.1
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000249128
Ensembl biotype	lncRNA
Entrez	102467225
RNAcentral	URS00002611B6 — lncRNA, 543 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 1 — 1 lncRNA

ENST00000503320

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000503320 — 5 exons

Exon	Start	End
ENSE00002019967	118609739	118609877
ENSE00002039961	118611360	118611427
ENSE00002042799	118614293	118614351
ENSE00002045481	118596188	118596221
ENSE00002086335	118627850	118628092

Expression profiles

Bgee: expression breadth broad, 51 present calls, max score 88.54.

Top tissues by expression

51 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
primordial germ cell in gonad	CL:0000670 ∩ UBERON:0000991	88.54	gold quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	80.79	silver quality
liver	UBERON:0002107	67.03	silver quality
lymph node	UBERON:0000029	57.52	gold quality
blood	UBERON:0000178	52.58	gold quality
hypothalamus	UBERON:0001898	51.92	gold quality
muscle of leg	UBERON:0001383	49.77	gold quality
esophagus mucosa	UBERON:0002469	49.63	gold quality
monocyte	CL:0000576	49.55	silver quality
prefrontal cortex	UBERON:0000451	48.29	gold quality
gastrocnemius	UBERON:0001388	48.14	gold quality
islet of Langerhans	UBERON:0000006	46.31	gold quality
heart left ventricle	UBERON:0002084	46.14	gold quality
tibial artery	UBERON:0007610	45.35	gold quality
body of pancreas	UBERON:0001150	45.26	gold quality
ascending aorta	UBERON:0001496	44.79	gold quality
heart	UBERON:0000948	44.63	gold quality
superior frontal gyrus	UBERON:0002661	44.49	silver quality
thoracic aorta	UBERON:0001515	43.91	silver quality
left lobe of thyroid gland	UBERON:0001120	43.14	silver quality
Brodmann (1909) area 9	UBERON:0013540	43.07	gold quality
lower esophagus muscularis layer	UBERON:0035833	43.00	silver quality
muscle layer of sigmoid colon	UBERON:0035805	42.25	silver quality
nucleus accumbens	UBERON:0001882	42.06	silver quality
transverse colon	UBERON:0001157	41.98	silver quality
myometrium	UBERON:0001296	41.97	silver quality
Ammon’s horn	UBERON:0001954	41.28	silver quality
spleen	UBERON:0002106	41.01	silver quality
subcutaneous adipose tissue	UBERON:0002190	41.00	gold quality
amygdala	UBERON:0001876	40.89	silver quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	2.28

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.