LINC02217

Summary

LINC02217 (long intergenic non-protein coding RNA 2217, HGNC:53084) is a long non-coding RNA gene on chromosome 5p15.1.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:53084
Approved symbol	LINC02217
Name	long intergenic non-protein coding RNA 2217
Location	5p15.1
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000248455
Ensembl biotype	lncRNA
Entrez	101929544
RNAcentral	URS0000A777B1 — lncRNA, 432 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 30 — 30 lncRNA

ENST00000505844, ENST00000507730, ENST00000508677, ENST00000652939, ENST00000653252, ENST00000653381, ENST00000658949, ENST00000659183, ENST00000659626, ENST00000663179, ENST00000663823, ENST00000666256, ENST00000668135, ENST00000668161, ENST00000669610, ENST00000669953, ENST00000671029, ENST00000689234, ENST00000690358, ENST00000702313, ENST00000817227, ENST00000817228, ENST00000817229, ENST00000817230, ENST00000817231, ENST00000817232, ENST00000817233, ENST00000817234, ENST00000817235, ENST00000817236

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000505844 — 2 exons

Exon	Start	End
ENSE00004220796	17436737	17437213
ENSE00004220805	17441469	17441694

Expression profiles

Bgee: expression breadth ubiquitous, 107 present calls, max score 90.15.

FANTOM5 (CAGE): breadth tissue_specific, TPM avg 0.3289 / max 129.1825, expressed in 46 samples.

FANTOM5 promoters (2 alternative TSS)

Promoter ID	TPM avg	Samples expressed
55885	0.2660	46
55886	0.0629	28

Top tissues by expression

109 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
prefrontal cortex	UBERON:0000451	90.15	gold quality
anterior cingulate cortex	UBERON:0009835	89.74	gold quality
superior frontal gyrus	UBERON:0002661	89.64	gold quality
frontal cortex	UBERON:0001870	89.56	gold quality
dorsolateral prefrontal cortex	UBERON:0009834	89.35	gold quality
right frontal lobe	UBERON:0002810	88.83	gold quality
Brodmann (1909) area 9	UBERON:0013540	88.68	gold quality
cerebral cortex	UBERON:0000956	87.18	gold quality
primary visual cortex	UBERON:0002436	84.24	gold quality
amygdala	UBERON:0001876	80.91	gold quality
temporal lobe	UBERON:0001871	80.80	gold quality
right hemisphere of cerebellum	UBERON:0014890	78.52	gold quality
thymus	UBERON:0002370	77.41	gold quality
brain	UBERON:0000955	76.44	gold quality
cerebellar vermis	UBERON:0004720	75.35	gold quality
Ammon’s horn	UBERON:0001954	75.32	gold quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	74.42	gold quality
bone marrow cell	CL:0002092	73.52	gold quality
blood	UBERON:0000178	70.38	gold quality
bone marrow	UBERON:0002371	68.04	gold quality
putamen	UBERON:0001874	66.79	gold quality
cortical plate	UBERON:0005343	66.46	gold quality
caudate nucleus	UBERON:0001873	66.22	gold quality
corpus callosum	UBERON:0002336	65.65	gold quality
quadriceps femoris	UBERON:0001377	64.14	gold quality
nucleus accumbens	UBERON:0001882	64.04	gold quality
multicellular organism	UBERON:0000468	63.57	gold quality
cerebellar hemisphere	UBERON:0002245	62.04	gold quality
monocyte	CL:0000576	61.91	gold quality
leukocyte	CL:0000738	61.78	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 1.

Experiment	Marker?	Max mean expression
E-ANND-3	yes	2.78

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.