LINC02219

Summary

LINC02219 (long intergenic non-protein coding RNA 2219, HGNC:53086) is a long non-coding RNA gene on chromosome 5q13.1.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:53086
Approved symbol	LINC02219
Name	long intergenic non-protein coding RNA 2219
Location	5q13.1
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000253787
Ensembl biotype	lncRNA
Entrez	102467655
RNAcentral	URS000075D3A7 — lncRNA, 454 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 7 — 7 lncRNA

ENST00000520762, ENST00000834230, ENST00000834231, ENST00000834232, ENST00000834233, ENST00000834234, ENST00000834235

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000520762 — 3 exons

Exon	Start	End
ENSE00002100201	68196370	68196489
ENSE00004251583	68189850	68189991
ENSE00004251589	68198190	68198410

Expression profiles

Bgee: expression breadth broad, 77 present calls, max score 87.36.

FANTOM5 (CAGE): breadth tissue_specific, TPM avg 0.0086 / max 9.0217, expressed in 3 samples.

FANTOM5 promoters (1 alternative TSS)

Promoter ID	TPM avg	Samples expressed
56792	0.0086	3

Top tissues by expression

77 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
left testis	UBERON:0004533	87.36	gold quality
testis	UBERON:0000473	86.44	gold quality
right testis	UBERON:0004534	85.58	gold quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	82.98	gold quality
colonic epithelium	UBERON:0000397	75.39	gold quality
ganglionic eminence	UBERON:0004023	67.99	gold quality
monocyte	CL:0000576	57.67	gold quality
prefrontal cortex	UBERON:0000451	55.41	gold quality
superior frontal gyrus	UBERON:0002661	54.78	gold quality
islet of Langerhans	UBERON:0000006	53.13	gold quality
multicellular organism	UBERON:0000468	52.73	gold quality
blood	UBERON:0000178	52.35	silver quality
gastrocnemius	UBERON:0001388	50.35	gold quality
liver	UBERON:0002107	48.70	silver quality
right lobe of liver	UBERON:0001114	48.62	silver quality
frontal cortex	UBERON:0001870	47.82	gold quality
Brodmann (1909) area 9	UBERON:0013540	46.67	gold quality
tibial artery	UBERON:0007610	46.60	gold quality
C1 segment of cervical spinal cord	UBERON:0006469	45.71	gold quality
substantia nigra	UBERON:0002038	45.33	gold quality
body of pancreas	UBERON:0001150	45.12	silver quality
cerebellum	UBERON:0002037	44.81	silver quality
left ovary	UBERON:0002119	44.79	silver quality
amygdala	UBERON:0001876	44.60	gold quality
cerebellar hemisphere	UBERON:0002245	44.39	silver quality
dorsolateral prefrontal cortex	UBERON:0009834	44.24	gold quality
right hemisphere of cerebellum	UBERON:0014890	44.05	silver quality
body of stomach	UBERON:0001161	43.99	gold quality
stomach	UBERON:0000945	43.97	gold quality
brain	UBERON:0000955	43.63	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	1.63

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.