LINC02229

Summary

LINC02229 (long intergenic non-protein coding RNA 2229, HGNC:53098) is a long non-coding RNA gene on chromosome 5q12.3.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:53098
Approved symbol	LINC02229
Name	long intergenic non-protein coding RNA 2229
Location	5q12.3
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000250313
Ensembl biotype	lncRNA
Entrez	101928769
RNAcentral	URS00001FE01D — lncRNA, 661 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 3 — 3 lncRNA

ENST00000508486, ENST00000767918, ENST00000767919

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000508486 — 3 exons

Exon	Start	End
ENSE00002019900	66507380	66507984
ENSE00002044732	66511557	66511644
ENSE00002065612	66508776	66508947

Expression profiles

Bgee: expression breadth broad, 50 present calls, max score 75.87.

Top tissues by expression

60 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	75.87	silver quality
skeletal muscle tissue	UBERON:0001134	69.42	silver quality
uterine cervix	UBERON:0000002	66.44	silver quality
prostate gland	UBERON:0002367	64.21	gold quality
spleen	UBERON:0002106	64.19	silver quality
kidney	UBERON:0002113	64.15	silver quality
quadriceps femoris	UBERON:0001377	64.14	gold quality
lung	UBERON:0002048	63.83	silver quality
cerebellar vermis	UBERON:0004720	63.05	gold quality
liver	UBERON:0002107	63.02	silver quality
bone marrow	UBERON:0002371	61.53	silver quality
thymus	UBERON:0002370	60.18	silver quality
right testis	UBERON:0004534	54.71	gold quality
testis	UBERON:0000473	53.25	gold quality
left testis	UBERON:0004533	52.92	gold quality
prefrontal cortex	UBERON:0000451	51.29	gold quality
endometrium	UBERON:0001295	50.54	gold quality
anterior cingulate cortex	UBERON:0009835	50.34	silver quality
small intestine	UBERON:0002108	50.31	gold quality
multicellular organism	UBERON:0000468	49.99	gold quality
monocyte	CL:0000576	49.79	silver quality
frontal cortex	UBERON:0001870	49.04	gold quality
myometrium	UBERON:0001296	48.90	gold quality
putamen	UBERON:0001874	47.95	gold quality
smooth muscle tissue	UBERON:0001135	47.48	gold quality
calcaneal tendon	UBERON:0003701	45.79	silver quality
brain	UBERON:0000955	45.47	gold quality
right atrium auricular region	UBERON:0006631	45.39	gold quality
gastrocnemius	UBERON:0001388	44.96	gold quality
caudate nucleus	UBERON:0001873	44.73	silver quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	1.13

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.