LINC02230

Summary

LINC02230 (long intergenic non-protein coding RNA 2230, HGNC:53099) is a long non-coding RNA gene on chromosome 5q13.2.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:53099
Approved symbol	LINC02230
Name	long intergenic non-protein coding RNA 2230
Location	5q13.2
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000251543
Ensembl biotype	lncRNA
Entrez	105379033
RNAcentral	URS0000BC45A5 — lncRNA, 558 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 2 — 2 lncRNA

ENST00000511174, ENST00000789334

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000511174 — 2 exons

Exon	Start	End
ENSE00004168564	73337848	73337955
ENSE00004168568	73338283	73338769

Expression profiles

Bgee: expression breadth broad, 34 present calls, max score 97.39.

Top tissues by expression

34 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	97.39	gold quality
monocyte	CL:0000576	65.98	gold quality
blood	UBERON:0000178	59.21	gold quality
right testis	UBERON:0004534	59.05	gold quality
testis	UBERON:0000473	58.12	gold quality
left testis	UBERON:0004533	58.11	gold quality
prefrontal cortex	UBERON:0000451	54.82	gold quality
gastrocnemius	UBERON:0001388	53.97	gold quality
subcutaneous adipose tissue	UBERON:0002190	53.50	gold quality
thoracic aorta	UBERON:0001515	51.69	gold quality
right lobe of liver	UBERON:0001114	50.88	silver quality
esophagus mucosa	UBERON:0002469	50.32	gold quality
skin of abdomen	UBERON:0001416	49.81	gold quality
adult mammalian kidney	UBERON:0000082	49.68	gold quality
esophagogastric junction muscularis propria	UBERON:0035841	49.20	gold quality
tibial nerve	UBERON:0001323	48.99	gold quality
Ammon’s horn	UBERON:0001954	48.95	gold quality
ascending aorta	UBERON:0001496	48.79	gold quality
amygdala	UBERON:0001876	48.11	gold quality
minor salivary gland	UBERON:0001830	48.05	gold quality
right atrium auricular region	UBERON:0006631	47.23	gold quality
skin of leg	UBERON:0001511	46.46	gold quality
anterior cingulate cortex	UBERON:0009835	45.98	gold quality
left uterine tube	UBERON:0001303	45.87	gold quality
vagina	UBERON:0000996	45.45	gold quality
lower esophagus muscularis layer	UBERON:0035833	45.02	gold quality
prostate gland	UBERON:0002367	43.75	gold quality
right frontal lobe	UBERON:0002810	42.45	gold quality
hypothalamus	UBERON:0001898	41.16	silver quality
transverse colon	UBERON:0001157	40.66	silver quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	0.49

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.