LINC02232

Summary

LINC02232 (long intergenic non-protein coding RNA 2232, HGNC:53103) is a long non-coding RNA gene on chromosome 4q13.1.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:53103
Approved symbol	LINC02232
Name	long intergenic non-protein coding RNA 2232
Location	4q13.1
Locus type	RNA, long non-coding
Status	Approved
Aliases	RP11-707A18.1
Ensembl gene	ENSG00000250125
Ensembl biotype	lncRNA
Entrez	401134
RNAcentral	URS000075C0D6 — lncRNA, 4089 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 46 — 46 lncRNA

ENST00000509932, ENST00000652257, ENST00000657399, ENST00000659694, ENST00000665259, ENST00000665528, ENST00000667167, ENST00000670052, ENST00000700907, ENST00000701056, ENST00000701180, ENST00000701324, ENST00000701625, ENST00000701711, ENST00000701946, ENST00000702068, ENST00000773860, ENST00000773861, ENST00000773862, ENST00000773863, ENST00000773864, ENST00000773865, ENST00000773866, ENST00000773867, ENST00000773868, ENST00000773869, ENST00000773870, ENST00000773871, ENST00000773872, ENST00000773873, ENST00000773874, ENST00000773875, ENST00000773876, ENST00000773877, ENST00000773878, ENST00000773879, ENST00000773880, ENST00000773881, ENST00000773882, ENST00000773883, ENST00000773884, ENST00000773885, ENST00000773886, ENST00000773887, ENST00000773888, ENST00000773889

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000509932 — 9 exons

Exon	Start	End
ENSE00002027645	64937607	64937839
ENSE00002034304	64914281	64917643
ENSE00002036001	65004403	65004501
ENSE00002046273	64977489	64977629
ENSE00002048370	64939956	64940036
ENSE00002056534	64939273	64939365
ENSE00002062510	64926592	64926661
ENSE00003815588	65024237	65024485
ENSE00003827390	65008782	65008912

Expression profiles

Bgee: expression breadth ubiquitous, 117 present calls, max score 78.83.

FANTOM5 (CAGE): breadth tissue_specific, TPM avg 0.5493 / max 71.7681, expressed in 162 samples.

FANTOM5 promoters (4 alternative TSS)

Promoter ID	TPM avg	Samples expressed
52275	0.3330	113
52276	0.1060	58
52277	0.0916	36
52278	0.0187	8

Top tissues by expression

211 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	78.83	gold quality
endothelial cell	CL:0000115	71.13	gold quality
primordial germ cell in gonad	CL:0000670 ∩ UBERON:0000991	68.20	gold quality
C1 segment of cervical spinal cord	UBERON:0006469	68.19	gold quality
gall bladder	UBERON:0002110	67.08	gold quality
cortical plate	UBERON:0005343	67.02	gold quality
spinal cord	UBERON:0002240	65.66	gold quality
ventricular zone	UBERON:0003053	65.25	gold quality
apex of heart	UBERON:0002098	63.60	gold quality
prefrontal cortex	UBERON:0000451	63.35	gold quality
anterior cingulate cortex	UBERON:0009835	63.04	gold quality
Brodmann (1909) area 9	UBERON:0013540	62.60	gold quality
hindlimb stylopod muscle	UBERON:0004252	62.43	gold quality
ganglionic eminence	UBERON:0004023	61.34	gold quality
right frontal lobe	UBERON:0002810	60.78	gold quality
dorsolateral prefrontal cortex	UBERON:0009834	60.13	gold quality
left lobe of thyroid gland	UBERON:0001120	59.28	gold quality
thyroid gland	UBERON:0002046	59.21	gold quality
neocortex	UBERON:0001950	59.02	gold quality
skin of abdomen	UBERON:0001416	58.89	gold quality
omental fat pad	UBERON:0010414	58.64	gold quality
peritoneum	UBERON:0002358	58.57	gold quality
frontal cortex	UBERON:0001870	58.50	gold quality
lower lobe of lung	UBERON:0008949	58.43	silver quality
substantia nigra	UBERON:0002038	58.06	gold quality
right lobe of thyroid gland	UBERON:0001119	57.64	gold quality
adipose tissue of abdominal region	UBERON:0007808	57.33	gold quality
hypothalamus	UBERON:0001898	56.58	gold quality
cerebral cortex	UBERON:0000956	56.46	gold quality
midbrain	UBERON:0001891	55.89	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 1.

Experiment	Marker?	Max mean expression
E-ANND-3	yes	4.39

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.