LINC02233

Summary

LINC02233 (long intergenic non-protein coding RNA 2233, HGNC:53104) is a long non-coding RNA gene on chromosome 4q32.1.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:53104
Approved symbol	LINC02233
Name	long intergenic non-protein coding RNA 2233
Location	4q32.1
Locus type	RNA, long non-coding
Status	Approved
Aliases	RP11-6C14.1
Ensembl gene	ENSG00000250488
Ensembl biotype	lncRNA
Entrez	109729132
RNAcentral	URS00000ED543 — lncRNA, 358 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 2 — 2 lncRNA

ENST00000513718, ENST00000788321

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000513718 — 3 exons

Exon	Start	End
ENSE00002054659	159745722	159745808
ENSE00002066178	159665833	159666658
ENSE00002074274	159777670	159777828

Expression profiles

Bgee: expression breadth broad, 30 present calls, max score 75.40.

FANTOM5 (CAGE): breadth tissue_specific, TPM avg 0.0767 / max 63.9858, expressed in 8 samples.

FANTOM5 promoters (1 alternative TSS)

Promoter ID	TPM avg	Samples expressed
54647	0.0767	8

Top tissues by expression

30 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
cortex of kidney	UBERON:0001225	75.40	gold quality
blood	UBERON:0000178	60.65	gold quality
monocyte	CL:0000576	52.75	silver quality
thyroid gland	UBERON:0002046	49.91	gold quality
calcaneal tendon	UBERON:0003701	47.16	silver quality
muscle of leg	UBERON:0001383	46.18	silver quality
gastrocnemius	UBERON:0001388	45.53	silver quality
prostate gland	UBERON:0002367	45.36	gold quality
heart	UBERON:0000948	45.30	gold quality
tibial artery	UBERON:0007610	45.11	silver quality
body of pancreas	UBERON:0001150	45.01	silver quality
gall bladder	UBERON:0002110	44.79	silver quality
thoracic mammary gland	UBERON:0005200	44.19	silver quality
minor salivary gland	UBERON:0001830	43.59	gold quality
adrenal tissue	UBERON:0018303	43.57	silver quality
islet of Langerhans	UBERON:0000006	43.10	silver quality
left coronary artery	UBERON:0001626	43.05	gold quality
tibial nerve	UBERON:0001323	42.60	silver quality
stomach	UBERON:0000945	42.25	silver quality
skin of leg	UBERON:0001511	42.03	silver quality
heart left ventricle	UBERON:0002084	41.80	silver quality
liver	UBERON:0002107	41.44	silver quality
subcutaneous adipose tissue	UBERON:0002190	41.11	silver quality
body of stomach	UBERON:0001161	40.94	silver quality
adipose tissue	UBERON:0001013	39.82	silver quality
vagina	UBERON:0000996	39.70	silver quality
esophagus	UBERON:0001043	39.59	silver quality
lower esophagus muscularis layer	UBERON:0035833	39.54	silver quality
omental fat pad	UBERON:0010414	38.86	silver quality
skin of abdomen	UBERON:0001416	35.31	silver quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	0.00

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.