LINC02235

Summary

LINC02235 (long intergenic non-protein coding RNA 2235, HGNC:53106) is a long non-coding RNA gene on chromosome 8q21.13.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:53106
Approved symbol	LINC02235
Name	long intergenic non-protein coding RNA 2235
Location	8q21.13
Locus type	RNA, long non-coding
Status	Approved
Aliases	RP11-354A14.1
Ensembl gene	ENSG00000254689
Ensembl biotype	lncRNA
Entrez	109729147
RNAcentral	URS0002123177 — lncRNA, 596 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 18 — 18 lncRNA

ENST00000534675, ENST00000647805, ENST00000655672, ENST00000656073, ENST00000658926, ENST00000660458, ENST00000660951, ENST00000661297, ENST00000663542, ENST00000664711, ENST00000668607, ENST00000670794, ENST00000671467, ENST00000726073, ENST00000726074, ENST00000726075, ENST00000726076, ENST00000726077

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000534675 — 2 exons

Exon	Start	End
ENSE00002166026	81922792	81923193
ENSE00002194728	81885377	81885440

Expression profiles

Bgee: expression breadth ubiquitous, 126 present calls, max score 82.87.

Top tissues by expression

126 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	82.87	gold quality
bone marrow cell	CL:0002092	77.31	silver quality
right testis	UBERON:0004534	73.69	gold quality
left testis	UBERON:0004533	72.78	gold quality
testis	UBERON:0000473	72.50	gold quality
primordial germ cell in gonad	CL:0000670 ∩ UBERON:0000991	72.40	gold quality
thyroid gland	UBERON:0002046	63.03	gold quality
left lobe of thyroid gland	UBERON:0001120	62.99	gold quality
right lobe of thyroid gland	UBERON:0001119	62.46	gold quality
sural nerve	UBERON:0015488	61.90	silver quality
ventricular zone	UBERON:0003053	61.25	gold quality
ganglionic eminence	UBERON:0004023	60.29	gold quality
skeletal muscle tissue	UBERON:0001134	59.71	gold quality
lower esophagus mucosa	UBERON:0035834	59.08	gold quality
bone marrow	UBERON:0002371	58.37	gold quality
C1 segment of cervical spinal cord	UBERON:0006469	57.50	gold quality
skin of abdomen	UBERON:0001416	56.97	gold quality
cortical plate	UBERON:0005343	56.84	silver quality
hindlimb stylopod muscle	UBERON:0004252	56.58	gold quality
endometrium	UBERON:0001295	56.15	gold quality
blood	UBERON:0000178	56.06	gold quality
zone of skin	UBERON:0000014	55.80	gold quality
primary visual cortex	UBERON:0002436	55.73	gold quality
gall bladder	UBERON:0002110	55.44	gold quality
monocyte	CL:0000576	55.26	gold quality
prefrontal cortex	UBERON:0000451	54.91	gold quality
skin of leg	UBERON:0001511	54.87	gold quality
muscle tissue	UBERON:0002385	54.53	gold quality
muscle of leg	UBERON:0001383	54.50	gold quality
subcutaneous adipose tissue	UBERON:0002190	54.41	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 1.

Experiment	Marker?	Max mean expression
E-ANND-3	yes	2.93

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.