LINC02236

Summary

LINC02236 (long intergenic non-protein coding RNA 2236, HGNC:53107) is a long non-coding RNA gene on chromosome 5p15.31.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:53107
Approved symbol	LINC02236
Name	long intergenic non-protein coding RNA 2236
Location	5p15.31
Locus type	RNA, long non-coding
Status	Approved
Aliases	RP11-332J15.1
Ensembl gene	ENSG00000251365
Ensembl biotype	lncRNA
Entrez	109729133
RNAcentral	URS00000DEB40 — lncRNA, 552 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 31 — 31 lncRNA

ENST00000506093, ENST00000508881, ENST00000648399, ENST00000649262, ENST00000652281, ENST00000660855, ENST00000688820, ENST00000690700, ENST00000691419, ENST00000701164, ENST00000725827, ENST00000725828, ENST00000725829, ENST00000725830, ENST00000725831, ENST00000725832, ENST00000725833, ENST00000725834, ENST00000725835, ENST00000725836, ENST00000725837, ENST00000725838, ENST00000725839, ENST00000725840, ENST00000725841, ENST00000725842, ENST00000725843, ENST00000725844, ENST00000725845, ENST00000725846, ENST00000725847

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000506093 — 3 exons

Exon	Start	End
ENSE00002040373	6768275	6768424
ENSE00002068164	6771599	6771953
ENSE00002076013	6765891	6765981

Expression profiles

Bgee: expression breadth ubiquitous, 121 present calls, max score 73.86.

FANTOM5 (CAGE): breadth tissue_specific, TPM avg 0.2267 / max 11.1347, expressed in 116 samples.

FANTOM5 promoters (2 alternative TSS)

Promoter ID	TPM avg	Samples expressed
55643	0.1751	102
55644	0.0515	12

Top tissues by expression

121 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
primordial germ cell in gonad	CL:0000670 ∩ UBERON:0000991	73.86	gold quality
superior frontal gyrus	UBERON:0002661	67.91	gold quality
ventricular zone	UBERON:0003053	67.35	gold quality
primary visual cortex	UBERON:0002436	66.88	gold quality
bone marrow cell	CL:0002092	65.11	silver quality
right frontal lobe	UBERON:0002810	64.65	gold quality
frontal cortex	UBERON:0001870	64.01	gold quality
dorsolateral prefrontal cortex	UBERON:0009834	63.91	gold quality
Brodmann (1909) area 9	UBERON:0013540	63.37	gold quality
anterior cingulate cortex	UBERON:0009835	63.11	gold quality
prefrontal cortex	UBERON:0000451	62.96	gold quality
skeletal muscle tissue	UBERON:0001134	62.57	gold quality
cerebral cortex	UBERON:0000956	62.46	gold quality
ganglionic eminence	UBERON:0004023	60.74	gold quality
liver	UBERON:0002107	59.80	gold quality
monocyte	CL:0000576	59.79	gold quality
right lobe of liver	UBERON:0001114	59.56	gold quality
endocervix	UBERON:0000458	59.44	gold quality
adenohypophysis	UBERON:0002196	58.92	gold quality
nucleus accumbens	UBERON:0001882	58.42	gold quality
right coronary artery	UBERON:0001625	57.81	gold quality
brain	UBERON:0000955	57.37	gold quality
right testis	UBERON:0004534	56.76	gold quality
hypothalamus	UBERON:0001898	56.52	gold quality
hindlimb stylopod muscle	UBERON:0004252	56.34	gold quality
left testis	UBERON:0004533	55.47	gold quality
granulocyte	CL:0000094	55.16	gold quality
testis	UBERON:0000473	55.15	gold quality
pituitary gland	UBERON:0000007	54.98	gold quality
islet of Langerhans	UBERON:0000006	54.31	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	3.76

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.