LINC02238

Summary

LINC02238 (long intergenic non-protein coding RNA 2238, HGNC:53116) is a long non-coding RNA gene on chromosome 1p31.1.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:53116
Approved symbol	LINC02238
Name	long intergenic non-protein coding RNA 2238
Location	1p31.1
Locus type	RNA, long non-coding
Status	Approved
Aliases	RP4-788P17.1
Ensembl gene	ENSG00000223479
Ensembl biotype	lncRNA
Entrez	109729166
RNAcentral	URS0000BC44E7 — lncRNA, 3355 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 2 — 2 lncRNA

ENST00000424953, ENST00000436262

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000424953 — 3 exons

Exon	Start	End
ENSE00001644498	73709144	73709581
ENSE00001694128	73699751	73699843
ENSE00001704747	73635216	73635241

Expression profiles

Bgee: expression breadth broad, 41 present calls, max score 92.99.

Top tissues by expression

41 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	92.99	gold quality
primordial germ cell in gonad	CL:0000670 ∩ UBERON:0000991	70.27	gold quality
sural nerve	UBERON:0015488	58.66	silver quality
prefrontal cortex	UBERON:0000451	57.30	gold quality
olfactory segment of nasal mucosa	UBERON:0005386	52.34	gold quality
frontal cortex	UBERON:0001870	52.10	gold quality
blood	UBERON:0000178	51.41	gold quality
myometrium	UBERON:0001296	50.63	gold quality
superior frontal gyrus	UBERON:0002661	49.94	gold quality
monocyte	CL:0000576	48.91	silver quality
gastrocnemius	UBERON:0001388	47.27	silver quality
left coronary artery	UBERON:0001626	46.45	silver quality
right lobe of thyroid gland	UBERON:0001119	46.41	gold quality
Brodmann (1909) area 9	UBERON:0013540	46.27	gold quality
cerebral cortex	UBERON:0000956	46.23	gold quality
subcutaneous adipose tissue	UBERON:0002190	45.49	gold quality
heart left ventricle	UBERON:0002084	45.41	gold quality
multicellular organism	UBERON:0000468	45.12	gold quality
thyroid gland	UBERON:0002046	44.98	gold quality
dorsolateral prefrontal cortex	UBERON:0009834	44.78	gold quality
transverse colon	UBERON:0001157	44.71	gold quality
cerebellar hemisphere	UBERON:0002245	44.69	silver quality
left lobe of thyroid gland	UBERON:0001120	43.89	gold quality
fallopian tube	UBERON:0003889	43.46	gold quality
esophagus mucosa	UBERON:0002469	43.36	silver quality
skin of leg	UBERON:0001511	42.48	gold quality
caudate nucleus	UBERON:0001873	42.05	silver quality
anterior cingulate cortex	UBERON:0009835	41.98	gold quality
right frontal lobe	UBERON:0002810	41.94	gold quality
right atrium auricular region	UBERON:0006631	41.89	silver quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	1.30

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.