LINC02239

Summary

LINC02239 (long intergenic non-protein coding RNA 2239, HGNC:27969) is a long non-coding RNA gene on chromosome 5p14.1.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:27969
Approved symbol	LINC02239
Name	long intergenic non-protein coding RNA 2239
Location	5p14.1
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000248908
Ensembl biotype	lncRNA
Entrez	340107
RNAcentral	URS000075B245 — lncRNA, 2305 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 2 — 2 lncRNA

ENST00000504339, ENST00000775159

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000504339 — 3 exons

Exon	Start	End
ENSE00002053981	24838856	24838938
ENSE00002063381	24835280	24837151
ENSE00002081068	24840249	24840583

Expression profiles

Bgee: expression breadth broad, 20 present calls, max score 96.41.

Top tissues by expression

121 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
tendon of biceps brachii	UBERON:0008188	96.41	gold quality
buccal mucosa cell	CL:0002336	91.59	gold quality
tendon	UBERON:0000043	90.65	gold quality
medial globus pallidus	UBERON:0002477	80.25	gold quality
skeletal muscle tissue of rectus abdominis	UBERON:0004511	79.18	silver quality
trabecular bone tissue	UBERON:0002483	76.96	silver quality
bone marrow	UBERON:0002371	76.61	silver quality
globus pallidus	UBERON:0001875	76.49	gold quality
nasal cavity mucosa	UBERON:0001826	75.93	silver quality
blood	UBERON:0000178	74.98	silver quality
secondary oocyte	CL:0000655	74.95	silver quality
vena cava	UBERON:0004087	74.78	silver quality
skeletal muscle tissue	UBERON:0001134	71.95	gold quality
gingival epithelium	UBERON:0001949	71.21	gold quality
skeletal muscle tissue of biceps brachii	UBERON:0004502	70.11	gold quality
sperm	CL:0000019	70.07	gold quality
mucosa of sigmoid colon	UBERON:0004993	68.78	silver quality
nasal cavity epithelium	UBERON:0005384	68.45	gold quality
deltoid	UBERON:0001476	68.23	silver quality
cartilage tissue	UBERON:0002418	67.80	silver quality
subcutaneous adipose tissue	UBERON:0002190	67.33	gold quality
cerebellar vermis	UBERON:0004720	66.76	silver quality
metanephros	UBERON:0000081	66.59	gold quality
decidua	UBERON:0002450	65.47	silver quality
tonsil	UBERON:0002372	65.42	gold quality
saliva-secreting gland	UBERON:0001044	64.51	gold quality
parotid gland	UBERON:0001831	64.24	gold quality
uterine cervix	UBERON:0000002	64.15	gold quality
pharyngeal mucosa	UBERON:0000355	63.89	gold quality
body of tongue	UBERON:0011876	63.27	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	1.96

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.