LINC02241

Summary

LINC02241 (long intergenic non-protein coding RNA 2241, HGNC:53126) is a long non-coding RNA gene on chromosome 5p14.3.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:53126
Approved symbol	LINC02241
Name	long intergenic non-protein coding RNA 2241
Location	5p14.3
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000251629
Ensembl biotype	lncRNA
Entrez	105374676
RNAcentral	URS0000BC4628 — lncRNA, 1705 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 88 — 88 lncRNA

ENST00000502427, ENST00000512688, ENST00000514876, ENST00000652820, ENST00000653395, ENST00000653469, ENST00000654310, ENST00000654483, ENST00000654633, ENST00000655312, ENST00000655570, ENST00000655853, ENST00000656233, ENST00000656809, ENST00000656908, ENST00000657383, ENST00000657737, ENST00000657864, ENST00000658934, ENST00000659281, ENST00000659352, ENST00000659988, ENST00000660152, ENST00000660211, ENST00000660411, ENST00000660427, ENST00000660453, ENST00000660596, ENST00000661008, ENST00000661226, ENST00000661358, ENST00000661443, ENST00000661497, ENST00000662082, ENST00000662354, ENST00000662453, ENST00000662556, ENST00000663691, ENST00000663898, ENST00000663927, ENST00000664411, ENST00000664874, ENST00000664930, ENST00000665164, ENST00000665581, ENST00000665726, ENST00000665740, ENST00000665750, ENST00000666214, ENST00000666241, ENST00000666245, ENST00000666246, ENST00000667015, ENST00000667230, ENST00000667653, ENST00000667696, ENST00000667733, ENST00000668352, ENST00000668363, ENST00000668593, ENST00000668829, ENST00000669224, ENST00000669262, ENST00000669525, ENST00000670749, ENST00000671578, ENST00000765441, ENST00000765442, ENST00000765443, ENST00000765444, ENST00000765445, ENST00000765446, ENST00000765447, ENST00000765448, ENST00000765449, ENST00000765450, ENST00000765451, ENST00000765452, ENST00000765453, ENST00000765454, ENST00000765455, ENST00000765456, ENST00000765457, ENST00000765458, ENST00000765459, ENST00000765460, ENST00000765461, ENST00000765462

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000502427 — 12 exons

Exon	Start	End
ENSE00002022890	20936819	20936984
ENSE00002027844	20807853	20807913
ENSE00002037271	20736955	20737101
ENSE00002043121	20936151	20936712
ENSE00002043958	20670567	20670611
ENSE00002048133	20937179	20937257
ENSE00002058154	20937559	20937691
ENSE00002064005	20895483	20895567
ENSE00002065145	20934932	20935039
ENSE00002068208	20932883	20932980
ENSE00002073592	20660712	20660768
ENSE00002074327	20611840	20611985

Expression profiles

Bgee: expression breadth ubiquitous, 159 present calls, max score 90.45.

FANTOM5 (CAGE): breadth tissue_specific, TPM avg 1.0258 / max 266.8114, expressed in 59 samples.

FANTOM5 promoters (2 alternative TSS)

Promoter ID	TPM avg	Samples expressed
55897	1.0080	59
55896	0.0178	10

Top tissues by expression

245 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
sperm	CL:0000019	90.45	gold quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	85.51	gold quality
buccal mucosa cell	CL:0002336	84.91	gold quality
left testis	UBERON:0004533	82.03	gold quality
right testis	UBERON:0004534	81.67	gold quality
testis	UBERON:0000473	79.62	gold quality
primordial germ cell in gonad	CL:0000670 ∩ UBERON:0000991	79.23	gold quality
calcaneal tendon	UBERON:0003701	79.03	gold quality
colonic epithelium	UBERON:0000397	76.58	gold quality
sural nerve	UBERON:0015488	76.11	gold quality
corpus callosum	UBERON:0002336	70.19	gold quality
bone marrow cell	CL:0002092	68.76	silver quality
adrenal tissue	UBERON:0018303	66.20	gold quality
tendon	UBERON:0000043	64.42	gold quality
ventricular zone	UBERON:0003053	62.35	gold quality
ganglionic eminence	UBERON:0004023	61.63	gold quality
hindlimb stylopod muscle	UBERON:0004252	60.20	gold quality
cortical plate	UBERON:0005343	59.51	gold quality
monocyte	CL:0000576	59.20	gold quality
leukocyte	CL:0000738	59.09	gold quality
right lobe of liver	UBERON:0001114	58.32	gold quality
tonsil	UBERON:0002372	56.31	gold quality
stromal cell of endometrium	CL:0002255	55.11	gold quality
right lung	UBERON:0002167	54.69	gold quality
islet of Langerhans	UBERON:0000006	54.58	gold quality
gall bladder	UBERON:0002110	54.56	gold quality
liver	UBERON:0002107	54.27	gold quality
muscle of leg	UBERON:0001383	53.72	gold quality
lymph node	UBERON:0000029	53.71	gold quality
cortex of kidney	UBERON:0001225	53.54	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 1.

Experiment	Marker?	Max mean expression
E-ANND-3	yes	3.90

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.