LINC02247

Summary

LINC02247 (long intergenic non-protein coding RNA 2247, HGNC:53140) is a long non-coding RNA gene on chromosome 9q34.2.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:53140
Approved symbol	LINC02247
Name	long intergenic non-protein coding RNA 2247
Location	9q34.2
Locus type	RNA, long non-coding
Status	Approved
Aliases	ENST00000417135
Ensembl gene	ENSG00000223729
Ensembl biotype	lncRNA
Entrez	105376310
RNAcentral	URS00005EA41E — lncRNA, 743 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 7 — 7 lncRNA

ENST00000417135, ENST00000783469, ENST00000783470, ENST00000783471, ENST00000783472, ENST00000783473, ENST00000783474

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000417135 — 2 exons

Exon	Start	End
ENSE00004157546	134293923	134294586
ENSE00004157551	134295311	134295538

Expression profiles

Bgee: expression breadth broad, 41 present calls, max score 88.36.

Top tissues by expression

41 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
primordial germ cell in gonad	CL:0000670 ∩ UBERON:0000991	88.36	gold quality
skin of leg	UBERON:0001511	70.40	gold quality
zone of skin	UBERON:0000014	69.67	gold quality
skin of abdomen	UBERON:0001416	68.76	gold quality
multicellular organism	UBERON:0000468	64.01	gold quality
stromal cell of endometrium	CL:0002255	58.86	gold quality
prefrontal cortex	UBERON:0000451	53.98	gold quality
monocyte	CL:0000576	50.61	silver quality
bone marrow	UBERON:0002371	48.65	silver quality
saliva-secreting gland	UBERON:0001044	48.61	gold quality
olfactory segment of nasal mucosa	UBERON:0005386	48.12	gold quality
tibial nerve	UBERON:0001323	48.07	gold quality
right lobe of liver	UBERON:0001114	48.05	silver quality
gastrocnemius	UBERON:0001388	46.64	gold quality
blood	UBERON:0000178	45.78	silver quality
vagina	UBERON:0000996	45.53	silver quality
subcutaneous adipose tissue	UBERON:0002190	44.43	gold quality
heart	UBERON:0000948	44.33	silver quality
cortex of kidney	UBERON:0001225	43.99	silver quality
substantia nigra	UBERON:0002038	43.85	gold quality
adult mammalian kidney	UBERON:0000082	43.09	silver quality
heart left ventricle	UBERON:0002084	43.09	silver quality
tibial artery	UBERON:0007610	43.06	silver quality
prostate gland	UBERON:0002367	42.34	silver quality
ascending aorta	UBERON:0001496	42.14	silver quality
putamen	UBERON:0001874	41.38	silver quality
left adrenal gland	UBERON:0001234	41.19	silver quality
right hemisphere of cerebellum	UBERON:0014890	41.15	silver quality
lower esophagus muscularis layer	UBERON:0035833	40.39	silver quality
esophagogastric junction muscularis propria	UBERON:0035841	40.36	silver quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	0.65

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.