LINC02249

Summary

LINC02249 (long intergenic non-protein coding RNA 2249, HGNC:32351) is a long non-coding RNA gene on chromosome 15q13.2.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:32351
Approved symbol	LINC02249
Name	long intergenic non-protein coding RNA 2249
Location	15q13.2
Locus type	RNA, long non-coding
Status	Approved
Aliases	DKFZp434L187
Ensembl gene	ENSG00000225930
Ensembl biotype	lncRNA
Entrez	26082
RNAcentral	URS000075DA9E — lncRNA, 4303 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 28 — 28 lncRNA

ENST00000455163, ENST00000562624, ENST00000648232, ENST00000688377, ENST00000749194, ENST00000749195, ENST00000749196, ENST00000749197, ENST00000749198, ENST00000749199, ENST00000749200, ENST00000749201, ENST00000749202, ENST00000749203, ENST00000749204, ENST00000749205, ENST00000749206, ENST00000749207, ENST00000749208, ENST00000749209, ENST00000749210, ENST00000749211, ENST00000749212, ENST00000749213, ENST00000749214, ENST00000749215, ENST00000749216, ENST00000749217

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000455163 — 1 exons

Exon	Start	End
ENSE00001799959	30210408	30210806

Expression profiles

Bgee: expression breadth ubiquitous, 107 present calls, max score 81.40.

Top tissues by expression

241 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	81.40	gold quality
primordial germ cell in gonad	CL:0000670 ∩ UBERON:0000991	74.06	gold quality
ganglionic eminence	UBERON:0004023	72.14	gold quality
ventricular zone	UBERON:0003053	70.72	gold quality
gluteal muscle	UBERON:0002000	68.39	gold quality
triceps brachii	UBERON:0001509	67.76	gold quality
buccal mucosa cell	CL:0002336	67.21	gold quality
embryo	UBERON:0000922	66.89	gold quality
cortical plate	UBERON:0005343	65.80	gold quality
skeletal muscle tissue of biceps brachii	UBERON:0004502	64.58	gold quality
tendon of biceps brachii	UBERON:0008188	64.03	silver quality
biceps brachii	UBERON:0001507	63.64	gold quality
vastus lateralis	UBERON:0001379	63.09	gold quality
quadriceps femoris	UBERON:0001377	63.08	gold quality
skeletal muscle tissue of rectus abdominis	UBERON:0004511	63.01	gold quality
skeletal muscle tissue	UBERON:0001134	62.90	gold quality
type B pancreatic cell	CL:0000169	62.65	gold quality
muscle organ	UBERON:0001630	62.07	silver quality
nasal cavity epithelium	UBERON:0005384	61.67	gold quality
upper arm skin	UBERON:0004263	61.15	gold quality
putamen	UBERON:0001874	60.41	gold quality
lateral globus pallidus	UBERON:0002476	59.76	gold quality
bone marrow	UBERON:0002371	59.74	gold quality
caudate nucleus	UBERON:0001873	59.38	gold quality
inferior olivary complex	UBERON:0002127	59.32	gold quality
dorsal motor nucleus of vagus nerve	UBERON:0002870	59.29	gold quality
lateral nuclear group of thalamus	UBERON:0002736	58.51	gold quality
body of tongue	UBERON:0011876	58.37	gold quality
trabecular bone tissue	UBERON:0002483	58.34	gold quality
vena cava	UBERON:0004087	58.16	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	0.62

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.