LINC02258

Summary

LINC02258 (long intergenic non-protein coding RNA 2258, HGNC:53165) is a long non-coding RNA gene on chromosome 12q21.32.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:53165
Approved symbol	LINC02258
Name	long intergenic non-protein coding RNA 2258
Location	12q21.32
Locus type	RNA, long non-coding
Status	Approved
Aliases	RP11-248E9.5
Ensembl gene	ENSG00000257912
Ensembl biotype	lncRNA
Entrez	110806294
RNAcentral	URS0000BC4435 — lncRNA, 495 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 2 — 2 lncRNA

ENST00000551280, ENST00000841763

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000551280 — 2 exons

Exon	Start	End
ENSE00002359803	87801408	87802028
ENSE00002412708	87795733	87795888

Expression profiles

Bgee: expression breadth broad, 15 present calls, max score 73.54.

Top tissues by expression

15 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
kidney	UBERON:0002113	73.54	silver quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	72.67	gold quality
monocyte	CL:0000576	59.13	gold quality
heart	UBERON:0000948	52.34	gold quality
dorsolateral prefrontal cortex	UBERON:0009834	51.37	gold quality
blood	UBERON:0000178	50.50	silver quality
gastrocnemius	UBERON:0001388	45.99	silver quality
lower esophagus muscularis layer	UBERON:0035833	42.10	silver quality
skin of leg	UBERON:0001511	42.03	gold quality
adipose tissue	UBERON:0001013	41.15	silver quality
subcutaneous adipose tissue	UBERON:0002190	40.67	silver quality
skin of abdomen	UBERON:0001416	40.49	silver quality
thoracic mammary gland	UBERON:0005200	39.69	silver quality
omental fat pad	UBERON:0010414	39.59	silver quality
ascending aorta	UBERON:0001496	37.99	silver quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	1.63

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.