LINC02260

Summary

LINC02260 (long intergenic non-protein coding RNA 2260, HGNC:27956) is a long non-coding RNA gene on chromosome 4q12.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:27956
Approved symbol	LINC02260
Name	long intergenic non-protein coding RNA 2260
Location	4q12
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000250456
Ensembl biotype	lncRNA
Entrez	339978
RNAcentral	URS0000A7704C — lncRNA, 2296 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 1 — 1 lncRNA

ENST00000508484

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000508484 — 2 exons

Exon	Start	End
ENSE00002077191	54606883	54607131
ENSE00002083128	54603211	54605177

Expression profiles

Bgee: expression breadth broad, 37 present calls, max score 77.40.

Top tissues by expression

157 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
primordial germ cell in gonad	CL:0000670 ∩ UBERON:0000991	77.40	silver quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	75.88	gold quality
oocyte	CL:0000023	63.54	gold quality
subthalamic nucleus	UBERON:0001906	61.44	gold quality
inferior vagus X ganglion	UBERON:0005363	60.99	gold quality
saphenous vein	UBERON:0007318	60.96	gold quality
dorsal plus ventral thalamus	UBERON:0001897	60.68	gold quality
corpus callosum	UBERON:0002336	60.17	gold quality
pericardium	UBERON:0002407	59.98	gold quality
lateral nuclear group of thalamus	UBERON:0002736	59.94	gold quality
medulla oblongata	UBERON:0001896	59.86	gold quality
uterine cervix	UBERON:0000002	59.75	gold quality
fundus of stomach	UBERON:0001160	59.52	gold quality
thymus	UBERON:0002370	59.52	gold quality
trigeminal ganglion	UBERON:0001675	59.50	gold quality
synovial joint	UBERON:0002217	59.47	gold quality
coronary artery	UBERON:0001621	59.46	gold quality
superior surface of tongue	UBERON:0007371	59.42	gold quality
dorsal root ganglion	UBERON:0000044	59.40	gold quality
pons	UBERON:0000988	59.39	gold quality
substantia nigra pars reticulata	UBERON:0001966	59.35	gold quality
cortex of kidney	UBERON:0001225	59.33	gold quality
substantia nigra pars compacta	UBERON:0001965	59.28	gold quality
superior vestibular nucleus	UBERON:0007227	59.21	gold quality
cerebellar vermis	UBERON:0004720	59.19	gold quality
ventral tegmental area	UBERON:0002691	59.18	gold quality
tongue	UBERON:0001723	59.14	gold quality
trachea	UBERON:0003126	59.14	gold quality
urethra	UBERON:0000057	59.11	gold quality
lateral globus pallidus	UBERON:0002476	59.08	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 1.

Experiment	Marker?	Max mean expression
E-ANND-3	yes	2.80

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.