LINC02275

Summary

LINC02275 (long intergenic non-protein coding RNA 2275, HGNC:53191) is a long non-coding RNA gene on chromosome 4q33.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:53191
Approved symbol	LINC02275
Name	long intergenic non-protein coding RNA 2275
Location	4q33
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000248319
Ensembl biotype	lncRNA
Entrez	100506085
RNAcentral	URS0000420EBB — lncRNA, 4365 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 17 — 17 lncRNA

ENST00000508313, ENST00000657085, ENST00000665818, ENST00000669558, ENST00000686674, ENST00000693142, ENST00000770302, ENST00000770303, ENST00000770304, ENST00000770305, ENST00000770306, ENST00000770307, ENST00000770308, ENST00000770309, ENST00000770310, ENST00000770311, ENST00000770312

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000508313 — 5 exons

Exon	Start	End
ENSE00002020464	169923061	169923187
ENSE00002030267	169933991	169934066
ENSE00002031331	169942706	169942843
ENSE00004132203	169975816	169975912
ENSE00004132218	169917761	169921697

Expression profiles

Bgee: expression breadth broad, 63 present calls, max score 66.21.

FANTOM5 (CAGE): breadth tissue_specific, TPM avg 0.0865 / max 19.4378, expressed in 19 samples.

FANTOM5 promoters (1 alternative TSS)

Promoter ID	TPM avg	Samples expressed
54816	0.0865	19

Top tissues by expression

63 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
adult mammalian kidney	UBERON:0000082	66.21	gold quality
kidney	UBERON:0002113	64.95	gold quality
liver	UBERON:0002107	64.61	gold quality
right lobe of liver	UBERON:0001114	62.61	gold quality
cortex of kidney	UBERON:0001225	61.76	gold quality
metanephros cortex	UBERON:0010533	60.35	gold quality
monocyte	CL:0000576	54.83	silver quality
endometrium	UBERON:0001295	53.59	gold quality
blood	UBERON:0000178	50.84	silver quality
bone marrow	UBERON:0002371	49.60	silver quality
lymph node	UBERON:0000029	49.26	silver quality
myometrium	UBERON:0001296	48.29	silver quality
duodenum	UBERON:0002114	48.27	silver quality
placenta	UBERON:0001987	48.20	gold quality
prefrontal cortex	UBERON:0000451	47.94	silver quality
calcaneal tendon	UBERON:0003701	47.75	silver quality
frontal cortex	UBERON:0001870	44.27	silver quality
tibial artery	UBERON:0007610	44.23	silver quality
gastrocnemius	UBERON:0001388	44.06	silver quality
right atrium auricular region	UBERON:0006631	43.96	gold quality
multicellular organism	UBERON:0000468	43.94	gold quality
saliva-secreting gland	UBERON:0001044	43.72	silver quality
islet of Langerhans	UBERON:0000006	43.36	silver quality
intestine	UBERON:0000160	42.71	silver quality
thoracic mammary gland	UBERON:0005200	42.68	gold quality
corpus callosum	UBERON:0002336	42.59	silver quality
cerebral cortex	UBERON:0000956	41.63	silver quality
Brodmann (1909) area 9	UBERON:0013540	41.36	silver quality
dorsolateral prefrontal cortex	UBERON:0009834	41.34	silver quality
putamen	UBERON:0001874	41.02	silver quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 1.

Experiment	Marker?	Max mean expression
E-ANND-3	yes	3.93

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.