LINC02290

Summary

LINC02290 (long intergenic non-protein coding RNA 2290, HGNC:53206) is a long non-coding RNA gene on chromosome 14q23.3.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:53206
Approved symbol	LINC02290
Name	long intergenic non-protein coding RNA 2290
Location	14q23.3
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000258502
Ensembl biotype	lncRNA
Entrez	105370540
RNAcentral	URS00026A2524 — lncRNA, 2207 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 23 — 23 lncRNA

ENST00000554187, ENST00000556291, ENST00000556662, ENST00000557050, ENST00000557723, ENST00000653569, ENST00000653964, ENST00000655653, ENST00000656725, ENST00000659630, ENST00000661113, ENST00000661737, ENST00000665713, ENST00000666006, ENST00000667302, ENST00000667482, ENST00000669231, ENST00000669805, ENST00000670103, ENST00000671168, ENST00000671226, ENST00000775474, ENST00000775475

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000554187 — 4 exons

Exon	Start	End
ENSE00002486129	66123661	66123781
ENSE00002504946	66117908	66118054
ENSE00002512888	66111626	66111995
ENSE00003864597	66112585	66112725

Expression profiles

Bgee: expression breadth ubiquitous, 104 present calls, max score 77.51.

FANTOM5 (CAGE): breadth tissue_specific, TPM avg 0.0107 / max 10.3750, expressed in 3 samples.

FANTOM5 promoters (1 alternative TSS)

Promoter ID	TPM avg	Samples expressed
140185	0.0107	3

Top tissues by expression

104 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	77.51	gold quality
primordial germ cell in gonad	CL:0000670 ∩ UBERON:0000991	69.49	gold quality
testis	UBERON:0000473	68.35	gold quality
left testis	UBERON:0004533	68.18	gold quality
right testis	UBERON:0004534	66.90	gold quality
hindlimb stylopod muscle	UBERON:0004252	61.32	gold quality
ganglionic eminence	UBERON:0004023	57.91	silver quality
sural nerve	UBERON:0015488	55.27	silver quality
cortical plate	UBERON:0005343	54.89	silver quality
calcaneal tendon	UBERON:0003701	54.23	silver quality
urinary bladder	UBERON:0001255	53.69	gold quality
gall bladder	UBERON:0002110	52.91	gold quality
skeletal muscle tissue	UBERON:0001134	52.40	silver quality
prefrontal cortex	UBERON:0000451	52.14	silver quality
liver	UBERON:0002107	51.73	gold quality
blood	UBERON:0000178	51.32	gold quality
placenta	UBERON:0001987	51.17	gold quality
monocyte	CL:0000576	50.78	silver quality
lymph node	UBERON:0000029	50.02	gold quality
bone marrow	UBERON:0002371	49.77	silver quality
vermiform appendix	UBERON:0001154	49.74	gold quality
cortex of kidney	UBERON:0001225	48.92	silver quality
endometrium	UBERON:0001295	48.58	silver quality
islet of Langerhans	UBERON:0000006	48.15	gold quality
muscle of leg	UBERON:0001383	47.96	gold quality
olfactory segment of nasal mucosa	UBERON:0005386	47.34	gold quality
primary visual cortex	UBERON:0002436	47.00	silver quality
adrenal tissue	UBERON:0018303	46.87	silver quality
pancreas	UBERON:0001264	46.84	gold quality
multicellular organism	UBERON:0000468	46.33	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	2.25

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.