LINC02298

Summary

LINC02298 (long intergenic non-protein coding RNA 2298, HGNC:53216) is a long non-coding RNA gene on chromosome 14q32.33.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:53216
Approved symbol	LINC02298
Name	long intergenic non-protein coding RNA 2298
Location	14q32.33
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000257556
Ensembl biotype	lncRNA
Entrez	102723354
RNAcentral	URS000075AB90 — lncRNA, 903 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 58 — 58 lncRNA

ENST00000546968, ENST00000548104, ENST00000548361, ENST00000655276, ENST00000659265, ENST00000686753, ENST00000701013, ENST00000823354, ENST00000823355, ENST00000823356, ENST00000823357, ENST00000823358, ENST00000823359, ENST00000823360, ENST00000823361, ENST00000823362, ENST00000823363, ENST00000823364, ENST00000823365, ENST00000823366, ENST00000823367, ENST00000823368, ENST00000823369, ENST00000823370, ENST00000823371, ENST00000823372, ENST00000823373, ENST00000823374, ENST00000823375, ENST00000823376, ENST00000823377, ENST00000823378, ENST00000823379, ENST00000823380, ENST00000823381, ENST00000823382, ENST00000823383, ENST00000823384, ENST00000823385, ENST00000823386, ENST00000823387, ENST00000823388, ENST00000823389, ENST00000823390, ENST00000823391, ENST00000823392, ENST00000823393, ENST00000823394, ENST00000823395, ENST00000823396, ENST00000823397, ENST00000823398, ENST00000823399, ENST00000823400, ENST00000823401, ENST00000823402, ENST00000823403, ENST00000823404

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000546968 — 3 exons

Exon	Start	End
ENSE00004231831	105098719	105099024
ENSE00004231839	105098473	105098573
ENSE00004231846	105094502	105095768

Expression profiles

Bgee: expression breadth ubiquitous, 131 present calls, max score 87.30.

FANTOM5 (CAGE): breadth broad, TPM avg 0.3334 / max 5.4916, expressed in 198 samples.

FANTOM5 promoters (1 alternative TSS)

Promoter ID	TPM avg	Samples expressed
141874	0.3334	198

Top tissues by expression

131 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
right uterine tube	UBERON:0001302	87.30	gold quality
mucosa of transverse colon	UBERON:0004991	83.79	gold quality
primordial germ cell in gonad	CL:0000670 ∩ UBERON:0000991	79.43	gold quality
colonic epithelium	UBERON:0000397	79.22	gold quality
nucleus accumbens	UBERON:0001882	75.64	gold quality
right frontal lobe	UBERON:0002810	74.97	gold quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	74.59	gold quality
olfactory segment of nasal mucosa	UBERON:0005386	74.45	gold quality
dorsolateral prefrontal cortex	UBERON:0009834	74.39	gold quality
putamen	UBERON:0001874	74.26	gold quality
fallopian tube	UBERON:0003889	74.18	gold quality
endocervix	UBERON:0000458	74.13	gold quality
stromal cell of endometrium	CL:0002255	74.10	gold quality
anterior cingulate cortex	UBERON:0009835	74.01	gold quality
Brodmann (1909) area 9	UBERON:0013540	73.52	gold quality
amygdala	UBERON:0001876	73.46	gold quality
temporal lobe	UBERON:0001871	73.40	gold quality
cerebral cortex	UBERON:0000956	73.22	gold quality
transverse colon	UBERON:0001157	73.18	gold quality
frontal cortex	UBERON:0001870	73.07	gold quality
cortical plate	UBERON:0005343	73.00	gold quality
prostate gland	UBERON:0002367	72.99	gold quality
left uterine tube	UBERON:0001303	72.66	gold quality
caudate nucleus	UBERON:0001873	72.65	gold quality
duodenum	UBERON:0002114	72.53	gold quality
tibial artery	UBERON:0007610	72.28	gold quality
ascending aorta	UBERON:0001496	72.25	gold quality
popliteal artery	UBERON:0002250	72.25	gold quality
thoracic aorta	UBERON:0001515	72.22	gold quality
body of uterus	UBERON:0009853	72.13	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 1.

Experiment	Marker?	Max mean expression
E-ANND-3	yes	3.93

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.