LINC02301

Summary

LINC02301 (long intergenic non-protein coding RNA 2301, HGNC:53220) is a long non-coding RNA gene on chromosome 14q31.1.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:53220
Approved symbol	LINC02301
Name	long intergenic non-protein coding RNA 2301
Location	14q31.1
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000258743
Ensembl biotype	lncRNA
Entrez	101928599
RNAcentral	URS00002339D4 — lncRNA, 428 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 43 — 43 lncRNA

ENST00000553760, ENST00000555150, ENST00000555798, ENST00000556970, ENST00000656622, ENST00000657900, ENST00000658091, ENST00000661658, ENST00000662642, ENST00000667773, ENST00000669510, ENST00000670297, ENST00000690424, ENST00000701740, ENST00000841947, ENST00000841948, ENST00000841949, ENST00000841950, ENST00000841951, ENST00000841952, ENST00000841953, ENST00000841954, ENST00000841955, ENST00000841956, ENST00000841957, ENST00000841958, ENST00000841959, ENST00000841960, ENST00000841961, ENST00000841962, ENST00000841963, ENST00000841964, ENST00000841965, ENST00000841966, ENST00000841967, ENST00000841968, ENST00000841969, ENST00000841970, ENST00000841971, ENST00000841972, ENST00000841973, ENST00000841974, ENST00000841975

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000553760 — 3 exons

Exon	Start	End
ENSE00002467584	82650924	82650996
ENSE00004266715	82642605	82642674
ENSE00004266736	82657115	82658442

Expression profiles

Bgee: expression breadth ubiquitous, 127 present calls, max score 86.56.

FANTOM5 (CAGE): breadth broad, TPM avg 0.5439 / max 44.5671, expressed in 230 samples.

FANTOM5 promoters (1 alternative TSS)

Promoter ID	TPM avg	Samples expressed
140885	0.5439	230

Top tissues by expression

127 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	86.56	gold quality
corpus callosum	UBERON:0002336	81.66	gold quality
bone marrow cell	CL:0002092	78.88	gold quality
bone marrow	UBERON:0002371	73.87	gold quality
colonic epithelium	UBERON:0000397	71.84	gold quality
ventricular zone	UBERON:0003053	69.56	gold quality
sural nerve	UBERON:0015488	68.84	gold quality
vermiform appendix	UBERON:0001154	67.07	gold quality
C1 segment of cervical spinal cord	UBERON:0006469	67.05	gold quality
skeletal muscle tissue	UBERON:0001134	66.58	gold quality
ganglionic eminence	UBERON:0004023	65.88	gold quality
cortical plate	UBERON:0005343	65.53	gold quality
primordial germ cell in gonad	CL:0000670 ∩ UBERON:0000991	64.56	gold quality
hindlimb stylopod muscle	UBERON:0004252	64.32	gold quality
liver	UBERON:0002107	63.27	gold quality
tonsil	UBERON:0002372	62.74	gold quality
adrenal tissue	UBERON:0018303	62.31	gold quality
testis	UBERON:0000473	62.12	gold quality
superior frontal gyrus	UBERON:0002661	61.73	gold quality
substantia nigra	UBERON:0002038	60.81	gold quality
primary visual cortex	UBERON:0002436	60.73	gold quality
lower esophagus mucosa	UBERON:0035834	60.30	gold quality
tibial nerve	UBERON:0001323	60.20	gold quality
right testis	UBERON:0004534	60.20	gold quality
left testis	UBERON:0004533	59.54	gold quality
prefrontal cortex	UBERON:0000451	59.37	gold quality
endometrium	UBERON:0001295	59.06	gold quality
urinary bladder	UBERON:0001255	58.29	gold quality
gall bladder	UBERON:0002110	57.46	gold quality
right lung	UBERON:0002167	57.42	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 1.

Experiment	Marker?	Max mean expression
E-ANND-3	yes	3.22

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.