LINC02312

Summary

LINC02312 (long intergenic non-protein coding RNA 2312, HGNC:53231) is a long non-coding RNA gene on chromosome 14q32.2.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:53231
Approved symbol	LINC02312
Name	long intergenic non-protein coding RNA 2312
Location	14q32.2
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000258869
Ensembl biotype	lncRNA
Entrez	100132612
RNAcentral	URS00007C9A3C — lncRNA, 3046 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 2 — 2 lncRNA

ENST00000555187, ENST00000557296

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000555187 — 2 exons

Exon	Start	End
ENSE00002496970	97749264	97751975
ENSE00002505661	97762498	97762831

Expression profiles

Bgee: expression breadth broad, 33 present calls, max score 66.90.

FANTOM5 (CAGE): breadth tissue_specific, TPM avg 0.0302 / max 24.3137, expressed in 7 samples.

FANTOM5 promoters (3 alternative TSS)

Promoter ID	TPM avg	Samples expressed
144830	0.0128	6
144829	0.0091	3
144828	0.0083	2

Top tissues by expression

33 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
colonic epithelium	UBERON:0000397	66.90	silver quality
primordial germ cell in gonad	CL:0000670 ∩ UBERON:0000991	64.35	gold quality
liver	UBERON:0002107	64.27	gold quality
blood	UBERON:0000178	56.47	gold quality
left adrenal gland cortex	UBERON:0035825	54.35	gold quality
monocyte	CL:0000576	50.70	gold quality
cortex of kidney	UBERON:0001225	50.53	silver quality
colon	UBERON:0001155	48.47	silver quality
right atrium auricular region	UBERON:0006631	47.05	gold quality
lung	UBERON:0002048	45.39	silver quality
heart left ventricle	UBERON:0002084	44.68	gold quality
small intestine	UBERON:0002108	44.39	silver quality
skin of abdomen	UBERON:0001416	43.34	gold quality
esophagus mucosa	UBERON:0002469	43.02	silver quality
body of stomach	UBERON:0001161	42.97	gold quality
omental fat pad	UBERON:0010414	42.76	gold quality
pituitary gland	UBERON:0000007	41.79	gold quality
vagina	UBERON:0000996	41.12	gold quality
left lobe of thyroid gland	UBERON:0001120	40.87	gold quality
spleen	UBERON:0002106	40.82	silver quality
skin of leg	UBERON:0001511	39.62	silver quality
minor salivary gland	UBERON:0001830	39.58	silver quality
esophagogastric junction muscularis propria	UBERON:0035841	39.56	silver quality
body of pancreas	UBERON:0001150	39.40	silver quality
urinary bladder	UBERON:0001255	39.34	silver quality
subcutaneous adipose tissue	UBERON:0002190	39.29	silver quality
ascending aorta	UBERON:0001496	39.20	silver quality
transverse colon	UBERON:0001157	39.16	silver quality
tibial nerve	UBERON:0001323	38.98	silver quality
caudate nucleus	UBERON:0001873	38.15	silver quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 1.

Experiment	Marker?	Max mean expression
E-ANND-3	yes	3.11

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.