LINC02316

Summary

LINC02316 (long intergenic non-protein coding RNA 2316, HGNC:53235) is a long non-coding RNA gene on chromosome 14q31.3.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:53235
Approved symbol	LINC02316
Name	long intergenic non-protein coding RNA 2316
Location	14q31.3
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000258912
Ensembl biotype	lncRNA
Entrez	102724380
RNAcentral	URS00026A285F — lncRNA, 1056 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 11 — 11 lncRNA

ENST00000553346, ENST00000656341, ENST00000656430, ENST00000658687, ENST00000659154, ENST00000662254, ENST00000665672, ENST00000665839, ENST00000666170, ENST00000668938, ENST00000669427

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000553346 — 6 exons

Exon	Start	End
ENSE00002440850	86054534	86054602
ENSE00002458735	86014686	86015049
ENSE00002464628	86055341	86055484
ENSE00002509597	86062550	86062616
ENSE00002510327	86062882	86062960
ENSE00002527273	86061518	86061562

Expression profiles

Bgee: expression breadth ubiquitous, 106 present calls, max score 80.58.

Top tissues by expression

106 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	80.58	silver quality
hindlimb stylopod muscle	UBERON:0004252	66.17	gold quality
bone marrow cell	CL:0002092	64.77	silver quality
sural nerve	UBERON:0015488	64.01	silver quality
corpus callosum	UBERON:0002336	61.97	gold quality
colonic epithelium	UBERON:0000397	61.87	silver quality
bone marrow	UBERON:0002371	59.62	gold quality
monocyte	CL:0000576	58.70	gold quality
granulocyte	CL:0000094	58.08	gold quality
ventricular zone	UBERON:0003053	57.58	silver quality
blood	UBERON:0000178	57.22	gold quality
tonsil	UBERON:0002372	56.71	gold quality
calcaneal tendon	UBERON:0003701	56.25	gold quality
ganglionic eminence	UBERON:0004023	55.80	gold quality
primary visual cortex	UBERON:0002436	54.35	gold quality
skeletal muscle tissue	UBERON:0001134	53.80	silver quality
lymph node	UBERON:0000029	53.75	gold quality
left testis	UBERON:0004533	53.54	gold quality
testis	UBERON:0000473	53.53	gold quality
liver	UBERON:0002107	52.07	silver quality
prefrontal cortex	UBERON:0000451	51.91	gold quality
right testis	UBERON:0004534	51.65	gold quality
cortex of kidney	UBERON:0001225	51.44	gold quality
superior frontal gyrus	UBERON:0002661	51.39	gold quality
muscle of leg	UBERON:0001383	50.51	gold quality
spleen	UBERON:0002106	50.17	gold quality
gastrocnemius	UBERON:0001388	48.85	gold quality
olfactory segment of nasal mucosa	UBERON:0005386	48.73	gold quality
vermiform appendix	UBERON:0001154	48.02	gold quality
gall bladder	UBERON:0002110	47.98	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	2.07

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.