LINC02328

Summary

LINC02328 (long intergenic non-protein coding RNA 2328, HGNC:53248) is a long non-coding RNA gene on chromosome 14q31.3.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:53248
Approved symbol	LINC02328
Name	long intergenic non-protein coding RNA 2328
Location	14q31.3
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000258733
Ensembl biotype	lncRNA
Entrez	101928767
RNAcentral	URS0000759BB4 — lncRNA, 750 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 22 — 22 lncRNA

ENST00000553668, ENST00000554647, ENST00000557195, ENST00000654590, ENST00000654941, ENST00000655493, ENST00000659242, ENST00000663635, ENST00000665938, ENST00000667571, ENST00000668344, ENST00000668922, ENST00000671341, ENST00000752522, ENST00000752523, ENST00000752524, ENST00000752525, ENST00000752526, ENST00000752527, ENST00000752528, ENST00000752529, ENST00000752530

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000553668 — 5 exons

Exon	Start	End
ENSE00002436159	86070863	86070967
ENSE00002442923	86127950	86128116
ENSE00002492185	86128665	86128773
ENSE00002513673	86129496	86129778
ENSE00002524437	85983946	85984022

Expression profiles

Bgee: expression breadth ubiquitous, 132 present calls, max score 81.46.

FANTOM5 (CAGE): breadth broad, TPM avg 2.6434 / max 238.1588, expressed in 546 samples.

FANTOM5 promoters (3 alternative TSS)

Promoter ID	TPM avg	Samples expressed
140928	0.9919	324
140926	0.9019	305
140927	0.7496	278

Top tissues by expression

134 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
granulocyte	CL:0000094	81.46	gold quality
calcaneal tendon	UBERON:0003701	80.96	gold quality
primordial germ cell in gonad	CL:0000670 ∩ UBERON:0000991	79.40	gold quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	78.95	gold quality
leukocyte	CL:0000738	77.11	gold quality
monocyte	CL:0000576	77.01	gold quality
bone marrow cell	CL:0002092	74.95	gold quality
skeletal muscle tissue	UBERON:0001134	73.07	gold quality
amygdala	UBERON:0001876	72.75	gold quality
spleen	UBERON:0002106	72.53	gold quality
bone marrow	UBERON:0002371	72.04	gold quality
lymph node	UBERON:0000029	71.66	gold quality
sural nerve	UBERON:0015488	71.07	gold quality
muscle of leg	UBERON:0001383	70.62	gold quality
muscle tissue	UBERON:0002385	70.25	gold quality
blood	UBERON:0000178	69.90	gold quality
spinal cord	UBERON:0002240	69.55	gold quality
C1 segment of cervical spinal cord	UBERON:0006469	69.54	gold quality
vermiform appendix	UBERON:0001154	69.13	gold quality
caudate nucleus	UBERON:0001873	68.79	gold quality
gastrocnemius	UBERON:0001388	68.72	gold quality
thymus	UBERON:0002370	68.66	silver quality
putamen	UBERON:0001874	68.41	gold quality
tonsil	UBERON:0002372	66.94	gold quality
tibial nerve	UBERON:0001323	66.80	gold quality
substantia nigra	UBERON:0002038	66.68	gold quality
nucleus accumbens	UBERON:0001882	66.64	gold quality
cortical plate	UBERON:0005343	66.44	gold quality
colonic epithelium	UBERON:0000397	66.29	silver quality
subcutaneous adipose tissue	UBERON:0002190	66.23	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	2.72

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.