LINC02334

Summary

LINC02334 (long intergenic non-protein coding RNA 2334, HGNC:53254) is a long non-coding RNA gene on chromosome 13q13.3.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:53254
Approved symbol	LINC02334
Name	long intergenic non-protein coding RNA 2334
Location	13q13.3
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000274317
Ensembl biotype	lncRNA
Entrez	101929077
RNAcentral	URS0000EF112B — lncRNA, 5033 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 6 — 6 lncRNA

ENST00000617568, ENST00000657277, ENST00000664606, ENST00000666031, ENST00000667295, ENST00000670194

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000617568 — 5 exons

Exon	Start	End
ENSE00001278444	38013404	38013501
ENSE00003713912	38029649	38029691
ENSE00003723711	37997812	37997937
ENSE00003736185	38043951	38048169
ENSE00003864244	37934491	37935037

Expression profiles

Bgee: expression breadth ubiquitous, 117 present calls, max score 77.49.

FANTOM5 (CAGE): breadth tissue_specific, TPM avg 0.0254 / max 19.4902, expressed in 4 samples.

FANTOM5 promoters (1 alternative TSS)

Promoter ID	TPM avg	Samples expressed
134797	0.0254	4

Top tissues by expression

117 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	77.49	gold quality
primordial germ cell in gonad	CL:0000670 ∩ UBERON:0000991	72.60	gold quality
bone marrow cell	CL:0002092	69.32	silver quality
skeletal muscle tissue	UBERON:0001134	69.29	gold quality
apex of heart	UBERON:0002098	68.60	gold quality
adult mammalian kidney	UBERON:0000082	66.38	gold quality
cortex of kidney	UBERON:0001225	66.26	gold quality
colonic epithelium	UBERON:0000397	66.19	silver quality
right atrium auricular region	UBERON:0006631	65.89	gold quality
heart left ventricle	UBERON:0002084	65.58	gold quality
kidney	UBERON:0002113	65.44	gold quality
heart	UBERON:0000948	64.14	gold quality
bone marrow	UBERON:0002371	62.36	gold quality
sural nerve	UBERON:0015488	62.09	silver quality
tonsil	UBERON:0002372	60.34	silver quality
metanephros cortex	UBERON:0010533	60.13	gold quality
ganglionic eminence	UBERON:0004023	59.31	gold quality
ventricular zone	UBERON:0003053	59.21	gold quality
urinary bladder	UBERON:0001255	57.73	gold quality
duodenum	UBERON:0002114	56.99	gold quality
fundus of stomach	UBERON:0001160	56.17	gold quality
islet of Langerhans	UBERON:0000006	54.87	gold quality
stromal cell of endometrium	CL:0002255	54.04	silver quality
liver	UBERON:0002107	53.15	silver quality
pancreas	UBERON:0001264	52.83	gold quality
lymph node	UBERON:0000029	52.21	silver quality
body of pancreas	UBERON:0001150	51.32	gold quality
monocyte	CL:0000576	51.18	silver quality
prefrontal cortex	UBERON:0000451	51.13	gold quality
blood	UBERON:0000178	51.10	silver quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 1.

Experiment	Marker?	Max mean expression
E-ANND-3	yes	3.91

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.