LINC02336

Summary

LINC02336 (long intergenic non-protein coding RNA 2336, HGNC:53256) is a long non-coding RNA gene on chromosome 13q31.3.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:53256
Approved symbol	LINC02336
Name	long intergenic non-protein coding RNA 2336
Location	13q31.3
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000271395
Ensembl biotype	lncRNA
Entrez	105370309
RNAcentral	URS0000EEADA1 — lncRNA, 1561 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 10 — 10 lncRNA

ENST00000434117, ENST00000659314, ENST00000670662, ENST00000756840, ENST00000795232, ENST00000820832, ENST00000820833, ENST00000820834, ENST00000820835, ENST00000820836

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000434117 — 2 exons

Exon	Start	End
ENSE00004227124	89550849	89551277
ENSE00004227125	89552105	89552496

Expression profiles

Bgee: expression breadth broad, 90 present calls, max score 82.32.

FANTOM5 (CAGE): breadth tissue_specific, TPM avg 0.0220 / max 22.2106, expressed in 7 samples.

FANTOM5 promoters (1 alternative TSS)

Promoter ID	TPM avg	Samples expressed
135611	0.0220	7

Top tissues by expression

90 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	82.32	gold quality
testis	UBERON:0000473	71.58	gold quality
left testis	UBERON:0004533	71.31	gold quality
right testis	UBERON:0004534	70.51	gold quality
cortical plate	UBERON:0005343	62.51	gold quality
liver	UBERON:0002107	57.45	gold quality
ganglionic eminence	UBERON:0004023	57.38	silver quality
multicellular organism	UBERON:0000468	53.43	gold quality
blood	UBERON:0000178	53.02	silver quality
right lobe of liver	UBERON:0001114	52.45	gold quality
leukocyte	CL:0000738	52.39	silver quality
adult mammalian kidney	UBERON:0000082	52.11	gold quality
kidney	UBERON:0002113	51.89	gold quality
monocyte	CL:0000576	51.70	silver quality
stromal cell of endometrium	CL:0002255	51.28	silver quality
bone marrow	UBERON:0002371	50.98	silver quality
lymph node	UBERON:0000029	49.11	silver quality
muscle of leg	UBERON:0001383	48.98	gold quality
corpus callosum	UBERON:0002336	48.67	silver quality
gastrocnemius	UBERON:0001388	48.11	gold quality
myometrium	UBERON:0001296	47.22	silver quality
duodenum	UBERON:0002114	47.15	silver quality
cortex of kidney	UBERON:0001225	46.31	silver quality
prefrontal cortex	UBERON:0000451	45.89	silver quality
urinary bladder	UBERON:0001255	45.47	silver quality
vermiform appendix	UBERON:0001154	45.35	silver quality
islet of Langerhans	UBERON:0000006	45.13	silver quality
skin of leg	UBERON:0001511	45.01	gold quality
olfactory segment of nasal mucosa	UBERON:0005386	44.96	silver quality
tibial artery	UBERON:0007610	44.38	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	0.65

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.