LINC02338

Summary

LINC02338 (long intergenic non-protein coding RNA 2338, HGNC:53258) is a long non-coding RNA gene on chromosome 13q21.1.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:53258
Approved symbol	LINC02338
Name	long intergenic non-protein coding RNA 2338
Location	13q21.1
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000277448
Ensembl biotype	lncRNA
Entrez	101926897
RNAcentral	URS000075D785 — lncRNA, 2753 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 1 — 1 lncRNA

ENST00000615202

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000615202 — 3 exons

Exon	Start	End
ENSE00003711881	58206259	58206388
ENSE00004097382	58206942	58209483
ENSE00004097383	58165778	58165907

Expression profiles

Bgee: expression breadth broad, 27 present calls, max score 59.32.

Top tissues by expression

27 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
cortical plate	UBERON:0005343	59.32	silver quality
prefrontal cortex	UBERON:0000451	50.26	gold quality
monocyte	CL:0000576	48.80	silver quality
tibial artery	UBERON:0007610	48.30	silver quality
right lobe of liver	UBERON:0001114	48.23	silver quality
islet of Langerhans	UBERON:0000006	47.94	gold quality
lung	UBERON:0002048	47.90	silver quality
Ammon’s horn	UBERON:0001954	46.02	gold quality
frontal cortex	UBERON:0001870	45.80	gold quality
superior frontal gyrus	UBERON:0002661	45.61	silver quality
olfactory segment of nasal mucosa	UBERON:0005386	45.40	silver quality
subcutaneous adipose tissue	UBERON:0002190	45.23	silver quality
cerebral cortex	UBERON:0000956	44.08	gold quality
Brodmann (1909) area 9	UBERON:0013540	42.78	silver quality
anterior cingulate cortex	UBERON:0009835	42.03	gold quality
esophagus mucosa	UBERON:0002469	41.90	silver quality
amygdala	UBERON:0001876	41.58	gold quality
dorsolateral prefrontal cortex	UBERON:0009834	41.03	silver quality
esophagogastric junction muscularis propria	UBERON:0035841	40.62	silver quality
C1 segment of cervical spinal cord	UBERON:0006469	40.56	silver quality
substantia nigra	UBERON:0002038	40.42	silver quality
caudate nucleus	UBERON:0001873	40.25	silver quality
hypothalamus	UBERON:0001898	39.94	silver quality
corpus callosum	UBERON:0002336	39.88	silver quality
right frontal lobe	UBERON:0002810	37.87	silver quality
right hemisphere of cerebellum	UBERON:0014890	37.62	silver quality
nucleus accumbens	UBERON:0001882	36.17	silver quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 1.

Experiment	Marker?	Max mean expression
E-ANND-3	yes	2.94

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.