LINC02339

Summary

LINC02339 (long intergenic non-protein coding RNA 2339, HGNC:53259) is a long non-coding RNA gene on chromosome 13q21.2.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:53259
Approved symbol	LINC02339
Name	long intergenic non-protein coding RNA 2339
Location	13q21.2
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000279797
Ensembl biotype	lncRNA
Entrez	101926951
RNAcentral	URS00007E2EC5 — lncRNA, 752 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 1 — 1 lncRNA

ENST00000472649

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000472649 — 2 exons

Exon	Start	End
ENSE00001837638	61427493	61427946
ENSE00001938541	61424689	61424986

Expression profiles

Bgee: expression breadth broad, 62 present calls, max score 96.09.

Top tissues by expression

180 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	96.09	silver quality
monocyte	CL:0000576	56.50	gold quality
prefrontal cortex	UBERON:0000451	56.00	gold quality
islet of Langerhans	UBERON:0000006	54.28	gold quality
right hemisphere of cerebellum	UBERON:0014890	50.18	gold quality
Brodmann (1909) area 9	UBERON:0013540	48.91	gold quality
anterior cingulate cortex	UBERON:0009835	48.68	gold quality
frontal cortex	UBERON:0001870	48.13	gold quality
neocortex	UBERON:0001950	47.95	gold quality
cerebellar hemisphere	UBERON:0002245	47.92	gold quality
descending thoracic aorta	UBERON:0002345	47.65	gold quality
Ammon’s horn	UBERON:0001954	46.69	gold quality
dorsolateral prefrontal cortex	UBERON:0009834	46.48	gold quality
gastrocnemius	UBERON:0001388	46.47	silver quality
cerebral cortex	UBERON:0000956	46.46	gold quality
amygdala	UBERON:0001876	46.38	gold quality
tibial artery	UBERON:0007610	45.91	gold quality
popliteal artery	UBERON:0002250	45.82	gold quality
calcaneal tendon	UBERON:0003701	45.49	silver quality
right frontal lobe	UBERON:0002810	45.43	gold quality
forebrain	UBERON:0001890	45.24	gold quality
body of pancreas	UBERON:0001150	45.16	silver quality
aorta	UBERON:0000947	45.07	gold quality
brain	UBERON:0000955	44.86	gold quality
pancreas	UBERON:0001264	44.50	gold quality
nucleus accumbens	UBERON:0001882	44.37	gold quality
C1 segment of cervical spinal cord	UBERON:0006469	44.20	gold quality
putamen	UBERON:0001874	44.07	gold quality
caudate nucleus	UBERON:0001873	43.99	gold quality
thoracic aorta	UBERON:0001515	43.89	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	1.14

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.