LINC02342

Summary

LINC02342 (long intergenic non-protein coding RNA 2342, HGNC:53262) is a long non-coding RNA gene on chromosome 13q21.33.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:53262
Approved symbol	LINC02342
Name	long intergenic non-protein coding RNA 2342
Location	13q21.33
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000280580
Ensembl biotype	lncRNA
Entrez	105370253
RNAcentral	URS0000811D39 — lncRNA, 461 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 2 — 2 lncRNA

ENST00000627910, ENST00000842085

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000627910 — 6 exons

Exon	Start	End
ENSE00003762646	68890497	68890560
ENSE00003763808	68893564	68893573
ENSE00003766845	68885053	68885217
ENSE00003768561	68878380	68878468
ENSE00003771894	68888717	68888766
ENSE00003773919	68889268	68889350

Expression profiles

Bgee: expression breadth ubiquitous, 109 present calls, max score 91.06.

Top tissues by expression

109 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
primordial germ cell in gonad	CL:0000670 ∩ UBERON:0000991	91.06	gold quality
ganglionic eminence	UBERON:0004023	66.57	gold quality
hindlimb stylopod muscle	UBERON:0004252	65.18	gold quality
cerebellar hemisphere	UBERON:0002245	64.58	gold quality
cerebellar cortex	UBERON:0002129	64.32	gold quality
right hemisphere of cerebellum	UBERON:0014890	63.92	gold quality
skeletal muscle tissue	UBERON:0001134	62.46	gold quality
endometrium	UBERON:0001295	59.03	gold quality
calcaneal tendon	UBERON:0003701	58.49	gold quality
prefrontal cortex	UBERON:0000451	57.63	gold quality
monocyte	CL:0000576	56.50	gold quality
right ovary	UBERON:0002118	56.45	gold quality
ectocervix	UBERON:0012249	56.38	gold quality
mucosa of stomach	UBERON:0001199	56.01	gold quality
islet of Langerhans	UBERON:0000006	55.83	gold quality
smooth muscle tissue	UBERON:0001135	55.78	gold quality
olfactory segment of nasal mucosa	UBERON:0005386	55.14	gold quality
vermiform appendix	UBERON:0001154	55.10	gold quality
primary visual cortex	UBERON:0002436	54.42	gold quality
ovary	UBERON:0000992	54.13	gold quality
blood	UBERON:0000178	53.99	gold quality
endocervix	UBERON:0000458	53.93	gold quality
superior frontal gyrus	UBERON:0002661	53.79	gold quality
Brodmann (1909) area 9	UBERON:0013540	53.78	gold quality
fundus of stomach	UBERON:0001160	53.68	gold quality
left ovary	UBERON:0002119	53.23	gold quality
muscle of leg	UBERON:0001383	53.22	gold quality
lymph node	UBERON:0000029	53.02	gold quality
frontal cortex	UBERON:0001870	52.60	gold quality
gastrocnemius	UBERON:0001388	52.48	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	1.29

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.