LINC02343

Summary

LINC02343 (long intergenic non-protein coding RNA 2343, HGNC:53263) is a long non-coding RNA gene on chromosome 13q13.2.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:53263
Approved symbol	LINC02343
Name	long intergenic non-protein coding RNA 2343
Location	13q13.2
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000271850
Ensembl biotype	lncRNA
Entrez	105370158
RNAcentral	URS0000BC4438 — lncRNA, 2695 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 18 — 18 lncRNA

ENST00000605909, ENST00000664334, ENST00000791005, ENST00000791006, ENST00000791007, ENST00000791008, ENST00000791009, ENST00000791010, ENST00000791011, ENST00000791012, ENST00000791013, ENST00000791014, ENST00000791015, ENST00000791016, ENST00000791017, ENST00000791018, ENST00000791019, ENST00000791020

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000605909 — 4 exons

Exon	Start	End
ENSE00003696224	34608476	34608619
ENSE00003698829	34613912	34614170
ENSE00003699287	34348043	34348124
ENSE00003700267	34429467	34429554

Expression profiles

Bgee: expression breadth broad, 88 present calls, max score 77.53.

FANTOM5 (CAGE): breadth tissue_specific, TPM avg 0.1141 / max 17.7305, expressed in 52 samples.

FANTOM5 promoters (2 alternative TSS)

Promoter ID	TPM avg	Samples expressed
134739	0.0951	42
134738	0.0190	9

Top tissues by expression

88 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
tonsil	UBERON:0002372	77.53	gold quality
bone marrow cell	CL:0002092	76.58	silver quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	74.56	gold quality
C1 segment of cervical spinal cord	UBERON:0006469	69.68	gold quality
cortex of kidney	UBERON:0001225	63.49	gold quality
kidney	UBERON:0002113	63.04	gold quality
adult mammalian kidney	UBERON:0000082	62.40	gold quality
metanephros cortex	UBERON:0010533	61.66	gold quality
prostate gland	UBERON:0002367	59.09	gold quality
lymph node	UBERON:0000029	57.42	gold quality
gall bladder	UBERON:0002110	57.00	gold quality
fundus of stomach	UBERON:0001160	55.64	gold quality
saliva-secreting gland	UBERON:0001044	55.55	gold quality
body of pancreas	UBERON:0001150	54.99	gold quality
pancreas	UBERON:0001264	54.50	gold quality
body of stomach	UBERON:0001161	54.36	gold quality
olfactory segment of nasal mucosa	UBERON:0005386	54.34	gold quality
stomach	UBERON:0000945	53.96	gold quality
substantia nigra	UBERON:0002038	53.60	gold quality
duodenum	UBERON:0002114	53.54	gold quality
minor salivary gland	UBERON:0001830	52.73	gold quality
islet of Langerhans	UBERON:0000006	52.66	gold quality
prefrontal cortex	UBERON:0000451	52.50	gold quality
thoracic mammary gland	UBERON:0005200	52.16	gold quality
blood	UBERON:0000178	51.55	gold quality
endometrium	UBERON:0001295	51.51	gold quality
hindlimb stylopod muscle	UBERON:0004252	51.14	gold quality
primary visual cortex	UBERON:0002436	50.26	gold quality
urinary bladder	UBERON:0001255	49.87	silver quality
multicellular organism	UBERON:0000468	48.65	gold quality

Single-cell (SCXA)

Detected in 2 experiment(s), a significant marker in 1.

Experiment	Marker?	Max mean expression
E-CURD-119	yes	53.90
E-ANND-3	no	1.62

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.