LINC02346

Summary

LINC02346 (long intergenic non-protein coding RNA 2346, HGNC:53268) is a long non-coding RNA gene on chromosome 15q12.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:53268
Approved symbol	LINC02346
Name	long intergenic non-protein coding RNA 2346
Location	15q12
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000206187
Ensembl biotype	lncRNA
Entrez	100128714
RNAcentral	URS00004F2E54 — lncRNA, 1967 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 20 — 20 lncRNA

ENST00000383019, ENST00000557171, ENST00000654388, ENST00000654579, ENST00000659028, ENST00000659702, ENST00000659855, ENST00000662457, ENST00000665071, ENST00000665430, ENST00000666764, ENST00000669487, ENST00000669776, ENST00000819397, ENST00000819398, ENST00000819399, ENST00000819400, ENST00000819401, ENST00000819402, ENST00000819403

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000383019 — 5 exons

Exon	Start	End
ENSE00001494321	26015334	26016021
ENSE00001494323	25902360	25902566
ENSE00001541507	26052367	26053120
ENSE00001541508	26052028	26052227
ENSE00001541510	26049125	26049242

Expression profiles

Bgee: expression breadth broad, 85 present calls, max score 78.80.

FANTOM5 (CAGE): breadth tissue_specific, TPM avg 0.0686 / max 9.3687, expressed in 36 samples.

FANTOM5 promoters (2 alternative TSS)

Promoter ID	TPM avg	Samples expressed
145556	0.0588	32
145557	0.0098	3

Top tissues by expression

85 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	78.80	gold quality
primordial germ cell in gonad	CL:0000670 ∩ UBERON:0000991	78.52	gold quality
nucleus accumbens	UBERON:0001882	75.25	gold quality
amygdala	UBERON:0001876	68.10	gold quality
temporal lobe	UBERON:0001871	68.07	gold quality
prefrontal cortex	UBERON:0000451	65.70	gold quality
caudate nucleus	UBERON:0001873	65.12	gold quality
superior frontal gyrus	UBERON:0002661	64.83	gold quality
anterior cingulate cortex	UBERON:0009835	63.61	gold quality
frontal cortex	UBERON:0001870	63.47	gold quality
putamen	UBERON:0001874	63.37	gold quality
cerebral cortex	UBERON:0000956	62.61	gold quality
dorsolateral prefrontal cortex	UBERON:0009834	61.99	gold quality
brain	UBERON:0000955	61.57	gold quality
Ammon’s horn	UBERON:0001954	61.39	gold quality
sural nerve	UBERON:0015488	61.07	gold quality
cerebellar hemisphere	UBERON:0002245	61.06	gold quality
Brodmann (1909) area 9	UBERON:0013540	60.69	gold quality
right frontal lobe	UBERON:0002810	60.31	gold quality
right hemisphere of cerebellum	UBERON:0014890	60.17	gold quality
gall bladder	UBERON:0002110	58.71	gold quality
ganglionic eminence	UBERON:0004023	58.53	silver quality
multicellular organism	UBERON:0000468	53.47	gold quality
blood	UBERON:0000178	53.24	gold quality
olfactory segment of nasal mucosa	UBERON:0005386	52.14	gold quality
hypothalamus	UBERON:0001898	51.46	gold quality
primary visual cortex	UBERON:0002436	51.30	gold quality
subcutaneous adipose tissue	UBERON:0002190	50.06	gold quality
liver	UBERON:0002107	49.97	silver quality
monocyte	CL:0000576	49.32	silver quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 1.

Experiment	Marker?	Max mean expression
E-ANND-3	yes	2.95

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.