LINC02362

Summary

LINC02362 (long intergenic non-protein coding RNA 2362, HGNC:53284) is a long non-coding RNA gene on chromosome 4q35.1.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:53284
Approved symbol	LINC02362
Name	long intergenic non-protein coding RNA 2362
Location	4q35.1
Locus type	RNA, long non-coding
Status	Approved
Aliases	PLUM
Ensembl gene	ENSG00000249096
Ensembl biotype	lncRNA
Entrez	102723766
RNAcentral	URS00007E3D6C — lncRNA, 821 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 14 — 14 lncRNA

ENST00000608785, ENST00000610683, ENST00000617323, ENST00000658007, ENST00000662023, ENST00000662503, ENST00000663216, ENST00000663586, ENST00000665219, ENST00000666261, ENST00000666394, ENST00000667133, ENST00000670119, ENST00000783709

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000608785 — 7 exons

Exon	Start	End
ENSE00003707032	184378965	184379129
ENSE00003708596	184376441	184376544
ENSE00003710646	184382134	184382303
ENSE00003722580	184365826	184365947
ENSE00003727670	184371669	184371807
ENSE00003742897	184372339	184372480
ENSE00003867174	184365183	184365354

Expression profiles

Bgee: expression breadth ubiquitous, 133 present calls, max score 96.73.

FANTOM5 (CAGE): breadth tissue_specific, TPM avg 0.3500 / max 87.1634, expressed in 56 samples.

FANTOM5 promoters (4 alternative TSS)

Promoter ID	TPM avg	Samples expressed
55130	0.2909	54
55131	0.0338	15
55133	0.0145	6
55132	0.0108	7

Top tissues by expression

133 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
right lobe of liver	UBERON:0001114	96.73	gold quality
liver	UBERON:0002107	94.36	gold quality
duodenum	UBERON:0002114	88.74	gold quality
rectum	UBERON:0001052	87.89	gold quality
colonic epithelium	UBERON:0000397	86.99	gold quality
bone marrow cell	CL:0002092	83.87	gold quality
vermiform appendix	UBERON:0001154	82.51	gold quality
mucosa of transverse colon	UBERON:0004991	82.51	gold quality
blood	UBERON:0000178	78.07	gold quality
saliva-secreting gland	UBERON:0001044	77.45	gold quality
tonsil	UBERON:0002372	77.32	gold quality
minor salivary gland	UBERON:0001830	77.30	gold quality
apex of heart	UBERON:0002098	76.46	gold quality
bone marrow	UBERON:0002371	76.36	gold quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	76.23	gold quality
transverse colon	UBERON:0001157	76.22	gold quality
spleen	UBERON:0002106	76.10	gold quality
lymph node	UBERON:0000029	75.70	gold quality
primordial germ cell in gonad	CL:0000670 ∩ UBERON:0000991	75.21	gold quality
small intestine	UBERON:0002108	73.99	gold quality
small intestine Peyer’s patch	UBERON:0003454	73.01	gold quality
heart left ventricle	UBERON:0002084	70.65	gold quality
intestine	UBERON:0000160	69.96	gold quality
colon	UBERON:0001155	68.43	gold quality
heart	UBERON:0000948	67.85	gold quality
right atrium auricular region	UBERON:0006631	67.26	gold quality
cortical plate	UBERON:0005343	66.64	gold quality
olfactory segment of nasal mucosa	UBERON:0005386	66.08	gold quality
corpus callosum	UBERON:0002336	65.45	gold quality
body of stomach	UBERON:0001161	65.24	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 1.

Experiment	Marker?	Max mean expression
E-ANND-3	yes	15.03

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.