LINC02380

Summary

LINC02380 (long intergenic non-protein coding RNA 2380, HGNC:53303) is a long non-coding RNA gene on chromosome 4q12.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:53303
Approved symbol	LINC02380
Name	long intergenic non-protein coding RNA 2380
Location	4q12
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000248505
Ensembl biotype	lncRNA
Entrez	101928851
RNAcentral	URS000001C11A — lncRNA, 1038 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 7 — 7 lncRNA

ENST00000510956, ENST00000658472, ENST00000661383, ENST00000664387, ENST00000664465, ENST00000667013, ENST00000790873

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000510956 — 7 exons

Exon	Start	End
ENSE00002026899	57464225	57464372
ENSE00002035910	57465641	57465980
ENSE00002047959	57434742	57434884
ENSE00002053957	57427305	57427427
ENSE00002063437	57426979	57427109
ENSE00003876968	57425925	57426018
ENSE00003886031	57462374	57462418

Expression profiles

Bgee: expression breadth broad, 52 present calls, max score 96.05.

Top tissues by expression

52 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
kidney	UBERON:0002113	96.05	silver quality
liver	UBERON:0002107	95.36	silver quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	90.00	gold quality
bone marrow cell	CL:0002092	74.11	gold quality
tonsil	UBERON:0002372	73.23	gold quality
colonic epithelium	UBERON:0000397	69.67	silver quality
primordial germ cell in gonad	CL:0000670 ∩ UBERON:0000991	60.66	gold quality
endometrium	UBERON:0001295	57.04	silver quality
pancreas	UBERON:0001264	56.01	silver quality
ascending aorta	UBERON:0001496	52.37	gold quality
left testis	UBERON:0004533	52.30	gold quality
testis	UBERON:0000473	51.97	gold quality
monocyte	CL:0000576	51.33	silver quality
colon	UBERON:0001155	50.47	silver quality
blood	UBERON:0000178	49.27	gold quality
right testis	UBERON:0004534	48.47	gold quality
heart	UBERON:0000948	48.35	gold quality
stomach	UBERON:0000945	48.01	gold quality
transverse colon	UBERON:0001157	48.00	silver quality
heart left ventricle	UBERON:0002084	47.79	gold quality
small intestine	UBERON:0002108	47.66	silver quality
muscle of leg	UBERON:0001383	47.47	gold quality
thoracic aorta	UBERON:0001515	47.47	gold quality
gastrocnemius	UBERON:0001388	47.12	gold quality
dorsolateral prefrontal cortex	UBERON:0009834	46.86	gold quality
islet of Langerhans	UBERON:0000006	46.35	silver quality
adrenal tissue	UBERON:0018303	46.17	silver quality
prefrontal cortex	UBERON:0000451	46.00	silver quality
tibial artery	UBERON:0007610	45.61	gold quality
substantia nigra	UBERON:0002038	45.53	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	2.46

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.